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gviz
•
reset
0
votes
0
replies
68
views
Simple confidence intervall Gviz
Gviz
28 days ago
William
• 0
0
votes
1
reply
1.4k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate
Gviz
updated 3 months ago by
ming
• 0 • written 3.3 years ago by
Ahdee
▴ 60
0
votes
0
replies
244
views
Setting ylims in bam coverage plot and assigning compound sashimi numbers to overlay plots
Coverage
Gviz
sashimi
6 months ago
Marco
• 0
0
votes
3
replies
1.6k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 8 months ago by
Maryna
• 0 • written 19 months ago by
Michael
• 0
0
votes
3
replies
619
views
Gviz and custom database
Gviz
updated 10 months ago by
James W. MacDonald
68k • written 10 months ago by
luigi.faino
• 0
1
vote
2
replies
1.9k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
updated 11 months ago by
Tim Peters
▴ 230 • written 2.1 years ago by
jose.ramirez1
▴ 10
0
votes
1
reply
513
views
GC content track on GVIZ
Gviz
updated 14 months ago by
James W. MacDonald
68k • written 14 months ago by
ilaria.maurizio
• 0
1
vote
3
replies
2.3k
views
Error in the UcscTrack() in package "Gviz"
DMR
Methylation
R
Gviz
updated 16 months ago by
Robert Ivanek
▴ 750 • written 3.9 years ago by
ltzhou
• 0
0
votes
0
replies
664
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
17 months ago
dbsgtk
• 0
1
vote
0
replies
855
views
Gviz : UcscTrack
rtracklayer
UCSC
Gviz
17 months ago
yujin
▴ 10
1
vote
3
replies
958
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer
Gviz
updated 17 months ago by
Hervé Pagès
16k • written 17 months ago by
yujin
▴ 10
0
votes
5
replies
2.5k
views
Gviz: UcscTrack and "GC Percent" information
Gviz
coMET
2.3 years ago • updated 18 months ago
Daniel E. Weeks
▴ 30
0
votes
2
replies
810
views
how to add annotation on individual track
Gviz
updated 23 months ago by
Robert Ivanek
▴ 750 • written 23 months ago by
xiaofeiwang18266
▴ 60
0
votes
0
replies
625
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
2.1 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
992
views
DMR.plot "Error: Too many stacks to draw"
DMRcate
Gviz
GV
2.2 years ago
gilliangoobie
• 0
0
votes
2
replies
1.7k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi
Gviz
updated 2.7 years ago by
James W. MacDonald
68k • written 2.7 years ago by
anikajohn
• 0
0
votes
1
reply
1.4k
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
2.7 years ago
rohitsatyam102
▴ 20
4
votes
1
reply
2.2k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 2.8 years ago by
James W. MacDonald
68k • written 2.8 years ago by
hsf378
• 0
1
vote
3
replies
2.5k
views
GVIZ giving error with loading hg38 genome
R
Gviz
3.0 years ago
RUser743
• 0
1
vote
2
replies
2.0k
views
Gviz and datatracks
Gviz
updated 3.1 years ago by
corinne_hutfilz
• 0 • written 3.2 years ago by
Bogdan
▴ 670
0
votes
0
replies
759
views
Color of 2nd exon
GViz
3.2 years ago
underscore
• 0
1
vote
1
reply
1.2k
views
Gviz DataTrack data transformation on the fly
aggregation
Gviz
DataTrack
updated 3.2 years ago by
Robert Ivanek
▴ 750 • written 3.3 years ago by
Robert
▴ 10
0
votes
0
replies
886
views
Modify y axis or add second y axis in Gviz
OverlayTrack
Gviz
3.2 years ago
Robert
▴ 10
4
votes
4
replies
2.8k
views
Gviz: ylim of the AlignmentsTrack
gviz
gviz-package
updated 3.3 years ago by
Pariksheet Nanda
▴ 120 • written 6.5 years ago by
wsciekly.maciek
▴ 10
0
votes
0
replies
773
views
Y axis Data Track GVIZ
GVIZ
3.5 years ago • updated 3.3 years ago
rbenel
▴ 40
1
vote
1
reply
1.9k
views
GVIZ on R not loading mm10 from UCSC
Gviz
3.5 years ago
RUser743
• 0
0
votes
3
replies
1.3k
views
Details AnnotationTrack swap densityplot and connectors
Gviz
3.5 years ago
Hartorthereal
• 0
1
vote
3
replies
1.7k
views
Gradient dotplot
Gviz
3.6 years ago • updated 3.5 years ago
sophieagger
• 0
0
votes
0
replies
1.1k
views
One read per line and other ordering of reads in Gviz
Gviz
3.6 years ago
pillailab1
• 0
0
votes
4
replies
1.6k
views
window parameter in DataTrack function with a single sample
Gviz
3.6 years ago • updated 3.5 years ago
rbenel
▴ 40
0
votes
1
reply
1.4k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 3.6 years ago by
James W. MacDonald
68k • written 3.6 years ago by
mar.pieraccioli
▴ 10
0
votes
4
replies
1.7k
views
AlignmentsTrack empty plot
Coverage
RNASeq
plot
Gviz
updated 2.2 years ago by
James W. MacDonald
68k • written 3.7 years ago by
karlaarz
• 0
1
vote
3
replies
1.5k
views
Can't produce a generegiontrack from my txdb anymore
gviz
GenomicFeatures
3.7 years ago
A.J.
▴ 20
0
votes
0
replies
1.1k
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
3.9 years ago
gdeniz
• 0
0
votes
0
replies
994
views
Gviz - Fixed width of title panel on left
Gviz
3.9 years ago
rheery
• 0
0
votes
0
replies
894
views
Gviz: set colors for UTRs
plot
color
Gviz
utr
4.0 years ago
ginlucks
• 0
0
votes
3
replies
1.3k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 4.0 years ago by
James W. MacDonald
68k • written 4.0 years ago by
svenbioinf
• 0
0
votes
0
replies
1.2k
views
Gviz import lor reads from bam file
Gviz
longreads
4.0 years ago
ginlucks
• 0
0
votes
1
reply
971
views
two tracks have the same axis
plot
Gviz
4.4 years ago
腾
• 0
0
votes
2
replies
1.3k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation
Alignment
Gviz
4.4 years ago
Vaibhav
• 0
0
votes
2
replies
1.3k
views
Gviz vertical text labels
Gviz
updated 4.4 years ago by
James W. MacDonald
68k • written 4.4 years ago by
Jake
▴ 90
0
votes
1
reply
1.2k
views
Gviz, keeping strand information while zooming in
Gviz
strand
4.5 years ago
svenbioinf
• 0
2
votes
2
replies
1.6k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 4.6 years ago by
James W. MacDonald
68k • written 4.6 years ago by
paul.jaschke
▴ 10
0
votes
1
reply
1.2k
views
Gviz package for plotting DMRs
Gviz
DMRs
updated 4.7 years ago by
Robert Ivanek
▴ 750 • written 4.7 years ago by
ayeshatariq78
• 0
0
votes
3
replies
2.8k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
4.7 years ago
roman.hillje
• 0
1
vote
3
replies
1.1k
views
Highlight uniq transcripts in Gviz
Gviz
updated 4.8 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
peris_baba
• 0
0
votes
2
replies
1.3k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 4.9 years ago by
Robert Ivanek
▴ 750 • written 4.9 years ago by
ari.loytynoja
• 0
0
votes
2
replies
1.4k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz
plotTracks
updated 5.1 years ago by
Robert Ivanek
▴ 750 • written 5.1 years ago by
syliang
• 0
0
votes
4
replies
1.5k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions
gviz
updated 5.1 years ago by
liz.ingsimmons
▴ 140 • written 5.1 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
1.2k
views
How to modify centromere depiction in Gviz IdeogramTrack?
Gviz
updated 5.1 years ago by
Robert Ivanek
▴ 750 • written 5.7 years ago by
Robert
▴ 10
50 results • Page
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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…
Comment: DiffBind can't find a DAR
by
ATpoint
★ 4.8k
"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …
Comment: DESeq - help with pair wise comparisons
by
bd2000
▴ 30
Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ktz
• 0
Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ktz
• 0
I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…
Votes
Comment: DESeq - help with pair wise comparisons
Answer: Is random access by row index possible for an indexed VCF file?
Answer: Is random access by row index possible for an indexed VCF file?
Answer: SingleR with multiple single cell references
Answer: SingleR with multiple single cell references
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