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[SOLVED] Problem with the installation of Rgraphviz
Graphviz
Rgraphviz
3.2 years ago
c.bell.lu
• 0
4
votes
3
replies
2.6k
views
Pathview: Exporting non native KEGG pathway to PNG
pathview
bioconductor
graphics
graphviz
Pathview
updated 8.5 years ago by
dondelelcaro
▴ 10 • written 8.6 years ago by
guillermo.marco
▴ 30
0
votes
2
replies
1.7k
views
Pathview: Exporting non native KEGG pathway ignoring same.layer argument
Pathview
rgraphviz
graphviz
KEGG
updated 8.6 years ago by
Luo Weijun
★ 1.6k • written 8.6 years ago by
guillermo.marco
▴ 30
0
votes
0
replies
2.2k
views
Read Graphviz file .dot in R
r
rstudio
rgraphviz
graphviz
.dot
8.7 years ago
pleaseteachmehowtodoit
• 0
1
vote
1
reply
1.5k
views
embed url in pathview images
pathview
r
pdf
kegg
graphviz
updated 9.2 years ago by
Luo Weijun
★ 1.6k • written 9.2 years ago by
firstdayonthejob2003
• 0
3
votes
5
replies
2.7k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview
clusterProfiler
KEGGpath
visualization
Graphviz
updated 9.3 years ago by
Luo Weijun
★ 1.6k • written 9.3 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.4k
views
Rgraphviz: nodes with multiple colors
rgraphviz
graphviz
R
9.7 years ago
oliverfrings
• 0
7 results • Page
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Comment: Can't post a question?
by
DavideSant
• 0
Thank you, this was super useful!
Comment: Error in retrieving clinical data
by
silickas
• 0
Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…
Comment: deseq2 lfc shrinkage with few DEGs
by
Robert
• 0
I'm dealing with a similar situation. I assume the coefficients related to batch effect would need to be included in idx also, is this corr…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
Thank you so much!! Yeah I had thought about this too, regarding the fact that DiffBind is a wrapper for counting peaks in this way in R di…
Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
by
aitor
• 0
Hi everyone. I have a RIP-Seq analysis with 3 conditions and 3 assays (IP, IgG and Input for each of them). 4 replicates for each conditio…
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Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
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