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ggbio labels with ggrepeal on circos plot
ggbio
r
graphics
6.6 years ago
gamma.jian
▴ 10
4
votes
3
replies
2.7k
views
Pathview: Exporting non native KEGG pathway to PNG
pathview
bioconductor
graphics
graphviz
Pathview
updated 8.6 years ago by
dondelelcaro
▴ 10 • written 8.7 years ago by
guillermo.marco
▴ 30
0
votes
3
replies
1.8k
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CHiPpeakAnno GO and/or KEGG results presenting
chippeakanno
go
kegg
graphics
9.0 years ago
lokapal
• 0
0
votes
1
reply
1.8k
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Plotting confidence intervals with NA values
graphics
confidence interval
NA
updated 9.6 years ago by
James W. MacDonald
68k • written 9.6 years ago by
Vinicius Henrique da Silva
▴ 40
0
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0
replies
1.3k
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GenomeGraphs, modify Y axis
genomegraphs
biomart
plot
graphics
9.7 years ago
koenhendriks89
• 0
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Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2
by
ATpoint
★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness
by
ATpoint
★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness
by
Gordon Smyth
52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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