Bioconductor Graphics

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ggbio r graphics

6.5 years ago gamma.jian ▴ 10

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pathview bioconductor graphics graphviz Pathview

updated 8.5 years ago by dondelelcaro ▴ 10 • written 8.6 years ago by guillermo.marco ▴ 30

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chippeakanno go kegg graphics

9.0 years ago lokapal • 0

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graphics confidence interval NA

updated 9.5 years ago by James W. MacDonald 68k • written 9.5 years ago by Vinicius Henrique da Silva ▴ 40

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genomegraphs biomart plot graphics

9.6 years ago koenhendriks89 • 0

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Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k

That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…

Answer: Having Trouble Using CNE12() and CNE21() in CNEr by 1324087964 • 0

![enter image description here][1] [1]: /media/images/d1a91557-b19e-4fbf-b5a1-c4fd42b9

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…

Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

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Comment: DESeq - help with pair wise comparisons

Answer: SingleR with multiple single cell references

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