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grange
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Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
4.2 years ago
mawusse.agbessi
• 0
2
votes
0
replies
811
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
4.6 years ago
rmash
▴ 20
0
votes
1
reply
611
views
Multi-sample Heatmap from GRange
GRange
updated 5.5 years ago by
James W. MacDonald
66k • written 5.5 years ago by
Danny
• 0
0
votes
3
replies
2.5k
views
Selecting columns form a list of grange objects
r
granges
grange
5.7 years ago
g.k
• 0
1
vote
3
replies
975
views
GRange and bam files
bioconductor
Grange
6.1 years ago
Merlin
▴ 10
0
votes
1
reply
937
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
6.1 years ago
g.k
• 0
1
vote
2
replies
1.4k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 6.2 years ago by
Michael Lawrence
★ 11k • written 6.2 years ago by
g.k
• 0
3
votes
4
replies
5.3k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
endrebak85
▴ 40
1
vote
2
replies
2.4k
views
Extract GRanges for gene data frame
GRange
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
mdeea123
▴ 10
9
votes
21
replies
11k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 8.4 years ago by
Ou, Jianhong
★ 1.3k • written 8.4 years ago by
tangming2005
▴ 190
0
votes
1
reply
1.0k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 9.3 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
cidster12
• 0
4
votes
2
replies
1.3k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
9.5 years ago
Bogdan
▴ 670
12 results • Page
1 of 1
Recent ...
Replies
Comment: How to compare subset of samples from VCF files
by
Gordon Smyth
50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files
by
Marco
• 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database
by
luigi.faino
• 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database
by
James W. MacDonald
66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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Marco Blanchette
▴ 30
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Fred Hutch (Recruiting)
▴ 40
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James W. MacDonald
66k
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Levi Waldron
★ 1.1k
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