Showing : gotools • reset
2
votes
5
replies
653
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
0
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953
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
4.2 years ago Madza Farias-Virgens • 0
0
votes
2
replies
2.0k
views
goTools: Error in goidvect[test] : invalid subscript type \'list\'
Transcription Microarray Annotation GO goTools Transcription Microarray Annotation GO
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
0
votes
3
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5.8k
views
how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 2.6 years ago by • 0 • written 13.0 years ago by ★ 7.2k
0
votes
9
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2.2k
views
ontoCompare (goTools) : goidvect error
GO goTools GO goTools
13.5 years ago Oana VIGY ▴ 80
0
votes
2
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2.2k
views
help in downloading some packages.
goTools sigPathway topGO goTools sigPathway topGO
updated 14.4 years ago by ▴ 550 • written 14.4 years ago by ▴ 100
0
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0
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974
views
goTools question
probe goTools probe goTools
14.4 years ago Pete Shepard ▴ 240
0
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0
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1.2k
views
obtaining GOID from nuID
GO goTools lumi GO goTools lumi
15.1 years ago Md.Mamunur Rashid ▴ 260
0
votes
1
reply
1.2k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 15.3 years ago by ★ 7.4k • written 15.3 years ago by ▴ 50
0
votes
0
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886
views
question about ontoCompare() performance change
GO PROcess goTools GO PROcess goTools
15.6 years ago Oana VIGY ▴ 80
0
votes
1
reply
1.3k
views
(no subject)
Pathways Clustering goTools GOstats Pathways Clustering goTools GOstats
updated 15.6 years ago by ▴ 270 • written 15.6 years ago by ▴ 300
0
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1
reply
1.4k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 15.7 years ago by ▴ 60 • written 15.7 years ago by ▴ 50
0
votes
4
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1.8k
views
error with ontoCompare (goTools)
GO hgu133a graph goTools GO hgu133a graph goTools
updated 16.1 years ago by ▴ 90 • written 16.1 years ago by ▴ 160
0
votes
2
replies
1.4k
views
using GSEAlm with GO geneSetCollections
GO affy goTools Category GSEABase GSEAlm GO affy goTools Category GSEABase GSEAlm
updated 16.3 years ago by ▴ 90 • written 16.3 years ago by ▴ 830
0
votes
0
replies
911
views
goTools package - extract genes
GO probe goTools GO probe goTools
16.7 years ago Anne Dirks Højfeldt / Region Nordjylland ▴ 10
0
votes
1
reply
1.1k
views
Reporting results of HyperGTest
GO goTools GO goTools
updated 16.9 years ago by ▴ 20 • written 16.9 years ago by ▴ 320
0
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1
reply
1.2k
views
Arabidopsis GO Pie Charts
goTools Category goTools Category
17.3 years ago Naomi Altman ★ 6.0k
0
votes
4
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2.3k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 17.4 years ago by ▴ 500 • written 17.4 years ago by ★ 1.4k
0
votes
3
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1.5k
views
GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 17.6 years ago by ★ 7.4k • written 17.6 years ago by ▴ 80
0
votes
0
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1.2k
views
Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray GO graph goTools Category oligo Microarray GO graph goTools Category oligo
17.8 years ago Paquet, Agnes ▴ 500
0
votes
0
replies
1.1k
views
question about the value retured by function ontoCompare()
GO hgu133a probe PROcess goTools oligo GO hgu133a probe PROcess goTools oligo
18.0 years ago Paquet, Agnes ▴ 500
0
votes
1
reply
1.0k
views
problems with library goCluster
GO goTools GOstats goCluster GO goTools GOstats goCluster
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 40
0
votes
1
reply
1.0k
views
Using ontoCompare with local GO database
GO goTools GO goTools
updated 18.1 years ago by ▴ 500 • written 18.1 years ago by ▴ 100
0
votes
1
reply
1.2k
views
goTools problem
goTools oligo goTools oligo
updated 18.1 years ago by ▴ 500 • written 18.1 years ago by ▴ 30
0
votes
1
reply
1.4k
views
GO annotation/analysis for ath1121501
Annotation GO ath1121501 goTools GOstats biomaRt Annotation GO ath1121501 goTools
updated 18.5 years ago by ▴ 870 • written 18.5 years ago by ▴ 340
0
votes
12
replies
2.4k
views
Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
19.0 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
1.2k
views
GO Tools
GO goTools GO goTools
19.8 years ago Paquet, Agnes ▴ 500
0
votes
0
replies
1.0k
views
GO Tools
goTools goTools
19.8 years ago Mayte Suarez-Farinas ▴ 300
0
votes
1
reply
1.1k
views
annotation packages and goTools
Annotation moe430a moe430b goTools Annotation moe430a moe430b goTools
updated 20.0 years ago by ★ 2.9k • written 20.0 years ago by ▴ 300
0
votes
2
replies
1.3k
views
goTools and plot and go group names
GO graph goTools GO graph goTools
updated 20.5 years ago by ▴ 500 • written 20.5 years ago by ▴ 320
0
votes
1
reply
1.5k
views
GOtools: argument is of length zero
goTools goTools
updated 20.5 years ago by ▴ 500 • written 20.5 years ago by ▴ 320
31 results • Page 1 of 1
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Comment: internal error in trio library when trying to use lfmm() in LEA package by PW • 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working by Guilherme • 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp by Ian D. ▴ 70
Please can you comment on this @rory.
Comment: Why the order of sample names in the beta matrix affect the analysis results of by 81becky • 0
It sounds like you're experiencing a common issue with data alignment in Champ.DMP. Ensure that your beta matrix and PD files are consisten…
Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by Blair • 0
@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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