Showing : gothic • reset
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from denove contig assembly to chromosome bins
diffhic gothic hicup hic-c hic
updated 6.0 years ago by ★ 28k • written 6.0 years ago by ▴ 10
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Error in scanBam(bam_fn) : could not find function "scanBam"
hic diffhic gothic hicup hic-c
6.0 years ago mictadlo ▴ 10
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3
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GOTHiC's GOTHiC's function fails with bwa input
GOTHiC
6.2 years ago alongalor ▴ 10
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921
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GOTHiC odd output
gothic
8.5 years ago manduchi ▴ 10
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GOTHiC hg19 error
GOTHiC hic
9.3 years ago Nathan Sheffield ▴ 10
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scaling loess curves
HiTC gothic diffhic HiC
9.3 years ago Bogdan ▴ 670
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Error in FUN(X[[i]], ...) : subscript out of bounds
bioconductor gothic R
updated 9.5 years ago by • 0 • written 9.6 years ago by • 0
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GOTHiC seqlevel bug
GOTHiC software error
9.7 years ago bef22 • 0
8 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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Scholar to James W. MacDonald 67k
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