Showing : go.db • reset
3
votes
1
reply
790
views
Difference between enrichGO results and Enrichr website results
Pathways GO.db clusterProfiler
updated 4 months ago by ★ 4.1k • written 4 months ago by ▴ 10
2
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5
replies
549
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 6 months ago by 67k • written 6 months ago by • 0
2
votes
17
replies
2.1k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 9 months ago by ▴ 760 • written 9 months ago by ▴ 50
0
votes
8
replies
1.1k
views
GOslim missing GO term
GO.db GOslim
11 months ago amanda • 0
0
votes
1
reply
597
views
Which species does GO.db use
GO.db annotationTools
updated 15 months ago by ▴ 760 • written 15 months ago by • 0
0
votes
0
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558
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
17 months ago RuBBiT0 ▴ 10
1
vote
0
replies
525
views
Typo in GO.db manual reference
GO.db
18 months ago RuBBiT0 ▴ 10
1
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2
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1.2k
views
GO.db for Bioconductor 3.17
GO.db devel
20 months ago Amanda D. Clark • 0
0
votes
2
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2.1k
views
Can't install GO.db
GOexpress GO.db GOSemSim
24 months ago Chruut • 0
0
votes
1
reply
857
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
2
votes
1
reply
2.7k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
2.4 years ago Lucía ▴ 20
1
vote
6
replies
1.4k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 2.8 years ago by 67k • written 2.8 years ago by • 0
0
votes
1
reply
2.8k
views
how to sort y-axis category of GO result
GO.db clusterProfiler dotplot barplot
3.1 years ago Yang • 0
0
votes
1
reply
1.1k
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 3.1 years ago by 67k • written 3.1 years ago by • 0
1
vote
6
replies
2.3k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 3.2 years ago by • 0 • written 3.2 years ago by ▴ 40
0
votes
1
reply
1.2k
views
ViSEAGO
gene_ontology GOID ViSEAGO GO.db custom2GO
3.3 years ago jabbar_campbell • 0
2
votes
2
replies
1.2k
views
retrieve gene IDs from GO.db GO
GO GO.db
3.5 years ago decppced • 0
1
vote
2
replies
1.1k
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
3.6 years ago MOHAMMAD • 0
2
votes
1
reply
1.0k
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 3.7 years ago by ▴ 780 • written 3.7 years ago by • 0
3
votes
2
replies
2.4k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 3.8 years ago by 25k • written 3.8 years ago by ★ 4.1k
0
votes
4
replies
1.6k
views
GO.db package can't be installed
install GO.db
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
1
vote
1
reply
1.6k
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 3.9 years ago by 67k • written 3.9 years ago by • 0
0
votes
4
replies
1.3k
views
topGO "argument is of length zero" error
GO.db topGO
updated 4.0 years ago by 67k • written 4.0 years ago by • 0
0
votes
2
replies
1.6k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 4.3 years ago by 67k • written 4.3 years ago by ★ 2.0k
0
votes
1
reply
2.0k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.4 years ago Jenny Drnevich ★ 2.0k
1
vote
2
replies
1.7k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 4.4 years ago by 67k • written 4.4 years ago by • 0
0
votes
4
replies
1.6k
views
Error attaching TIN
software error GO.db TIN
updated 4.5 years ago by 25k • written 4.5 years ago by • 0
1
vote
2
replies
841
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.5 years ago by 67k • written 4.5 years ago by • 0
1
vote
4
replies
1.3k
views
Trouble installing package GO.db
GO.db
updated 4.8 years ago by 67k • written 4.8 years ago by • 0
0
votes
1
reply
1.3k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db hgu95av2.db R3.6.0
updated 5.3 years ago by 25k • written 5.3 years ago by • 0
0
votes
5
replies
4.6k
views
Cannot install GO.db for R 3.6.1
GO.db R 3.6.1 source package
updated 5.3 years ago by 25k • written 5.3 years ago by • 0
2
votes
5
replies
1.2k
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 5.4 years ago by 67k • written 5.4 years ago by • 0
0
votes
5
replies
1.7k
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 5.7 years ago by 67k • written 5.7 years ago by • 0
1
vote
2
replies
1.7k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 5.9 years ago by 25k • written 5.9 years ago by ★ 1.1k
3
votes
3
replies
1.2k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 6.1 years ago by • 0 • written 6.2 years ago by ▴ 10
1
vote
1
reply
1.2k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 6.2 years ago by 67k • written 6.2 years ago by • 0
2
votes
2
replies
1.5k
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
2
votes
2
replies
1.1k
views
Troubles installing GO.db
go.db
updated 6.5 years ago by 25k • written 6.5 years ago by ▴ 20
3
votes
8
replies
2.8k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.5 years ago by 25k • written 6.5 years ago by ▴ 10
0
votes
1
reply
1.9k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.6 years ago by ★ 1.3k • written 6.6 years ago by • 0
0
votes
0
replies
1.3k
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats go.db
6.7 years ago crafy • 0
0
votes
3
replies
1.3k
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db annotate
6.7 years ago dusan.petrovic • 0
0
votes
1
reply
2.6k
views
GO.db failure to install
software error go.db
6.7 years ago matt.a.bennett25890 • 0
0
votes
1
reply
1.7k
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 7.1 years ago by 25k • written 7.1 years ago by • 0
0
votes
1
reply
2.1k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 7.1 years ago by 25k • written 7.1 years ago by • 0
1
vote
10
replies
2.9k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.6 years ago by 67k • written 7.6 years ago by • 0
0
votes
3
replies
4.4k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
7.7 years ago Sidi.Ma • 0
0
votes
2
replies
1.6k
views
GO.db will not download
GO.db
7.7 years ago MOD • 0
0
votes
1
reply
1.9k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db WGCNA
updated 7.7 years ago by 25k • written 7.7 years ago by ▴ 10
1
vote
5
replies
5.6k
views
can not able to install go.db
go.db
updated 8.0 years ago by 25k • written 8.0 years ago by • 0
50 results • Page 1 of 1
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Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0
> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…
Comment: EuroBioC2024 abstract submission is open! by Esperan • 0
Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k
I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…
Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0
Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…
Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k
I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …
Votes
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
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