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glmtreat
•
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6
votes
6
replies
2.1k
views
GO enrichment analysis with goana after performing DE analysis with glmTreat
go
DE
edger
rnaseq
glmTreat
updated 4.2 years ago by
Gordon Smyth
51k • written 4.2 years ago by
Raito92
▴ 60
5
votes
5
replies
1.9k
views
interpreting FC values from glmTreat, especially unshrunk log-fold-changes
edgeR
glmTreat
significance testing
updated 4.6 years ago by
Yunshun Chen
▴ 860 • written 4.6 years ago by
flemi221
• 0
3
votes
3
replies
1.2k
views
Apply different cutoffs with edgeR pipeline and glmTreat for RNA-Seq DEG analysis
edger
differential gene expression
glmtreat
updated 5.6 years ago by
Gordon Smyth
51k • written 5.6 years ago by
svlachavas
▴ 830
0
votes
5
replies
1.6k
views
glmTreat Errors for multi coefficient and analysis of deviance situations.
edgeR
glmTreat
analysis of deviance
updated 6.5 years ago by
Ryan C. Thompson
★ 7.9k • written 6.5 years ago by
BharathAnanth
▴ 80
3
votes
2
replies
1.3k
views
ROAST after edgeR glmTreat and average RPKM filter
roast
edgeR
glmtreat
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
b.nota
▴ 360
1
vote
1
reply
1.0k
views
Treat p > 1
edgeR
glmTreat
updated 8.0 years ago by
Yunshun Chen
▴ 860 • written 8.0 years ago by
James W. MacDonald
66k
6 results • Page
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Comment: error loading collectTRI regulon
by
silvaesilva.da
• 0
Fantastic. Thank you very much. Everything has been sorted out
Answer: DESeq2 returns results for group with just one replicate
by
James W. MacDonald
66k
There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …
Answer: Limma model.matrix design with batch effect and different life stages proportion
by
Masongeorge
• 0
Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.
Comment: error loading collectTRI regulon
by
deeenes
▴ 50
I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…
Answer: GESA with certain gene list returns no result with human genom, but many result
by
James W. MacDonald
66k
Ideally you would use something better than gene symbols for this. I realize that biologists like gene symbols, but they are really terribl…
Votes
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Answer: DESeq2 returns results for group with just one replicate
Answer: DESeq2 returns results for group with just one replicate
Comment: error loading collectTRI regulon
A: Scaling option in fastMNN
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