Bioconductor Glmlrt()

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edger design matrix glmlrt() glmQFTest() paired design

6.3 years ago oakhamwolf • 0

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2.2k

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EdgeR glmlrt() ql f-test

8.3 years ago • updated 7.6 years ago elineverbon ▴ 20

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edger contrast covariate glmlrt()

7.8 years ago Jeff Skinner • 0

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edger differential gene expression glmlrt()

8.1 years ago simarsidhu25 • 0

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3.2k

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edger differential gene expression glmlrt()

8.1 years ago simarsidhu25 • 0

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edger glmfit glmlrt()

updated 9.2 years ago by Aaron Lun ★ 28k • written 9.2 years ago by cadeans • 0

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edger glmlrt() differential expression design and contrast matrix

updated 9.6 years ago by Gordon Smyth 52k • written 9.6 years ago by carlgdeboer • 0

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edger rnaseq glmlrt()

updated 9.9 years ago by James W. MacDonald 67k • written 9.9 years ago by MBWatson • 0

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7.5k

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edgeR glmLRT() multiple factor design multiple testing correction

updated 10.1 years ago by Aaron Lun ★ 28k • written 10.1 years ago by Ekarl2 ▴ 80

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Comment: DESeq2 analysis with transcript counts by kahunroleh • 0

Thanks for sharing the solution. I also face this problem. [nulls][1] [1]: https://nulls-brawl-apk.fr/

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by kahunroleh • 0

Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…

Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0

thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…

Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

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Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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