Showing : glmlrt() • reset
2
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EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger design matrix glmlrt() glmQFTest() paired design
6.5 years ago oakhamwolf • 0
4
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15
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2.3k
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Adjusting for procedural effect and deciding on statistical test
EdgeR glmlrt() ql f-test
8.5 years ago • updated 7.8 years ago elineverbon ▴ 20
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7
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4.1k
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Computing contrasts with a covariate using edgeR glmLRT()
edger contrast covariate glmlrt()
8.0 years ago Jeff Skinner • 0
1
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6
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1.5k
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design of edgeR GLM test
edger differential gene expression glmlrt()
8.4 years ago • updated 8.3 years ago simarsidhu25 • 0
4
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7
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3.3k
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Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger differential gene expression glmlrt()
8.4 years ago simarsidhu25 • 0
7
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5
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4.1k
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edgeR effects of design on testing main effects and interactions
edger glmfit glmlrt()
updated 9.5 years ago by ★ 28k • written 9.5 years ago by • 0
4
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8
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2.2k
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EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger glmlrt() differential expression design and contrast matrix
updated 9.8 years ago by 52k • written 9.8 years ago by • 0
5
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7
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4.5k
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How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger rnaseq glmlrt()
updated 10.1 years ago by 68k • written 10.1 years ago by • 0
6
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7
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EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR glmLRT() multiple factor design multiple testing correction
updated 10.3 years ago by ★ 28k • written 10.3 years ago by ▴ 80
9 results • Page 1 of 1
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Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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