Showing : glmlrt() • reset
2
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EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger design matrix glmlrt() glmQFTest() paired design
6.2 years ago oakhamwolf • 0
4
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15
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2.1k
views
Adjusting for procedural effect and deciding on statistical test
EdgeR glmlrt() ql f-test
8.2 years ago • updated 7.5 years ago elineverbon ▴ 20
0
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7
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4.0k
views
Computing contrasts with a covariate using edgeR glmLRT()
edger contrast covariate glmlrt()
7.7 years ago Jeff Skinner • 0
1
vote
6
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1.4k
views
design of edgeR GLM test
edger differential gene expression glmlrt()
8.1 years ago • updated 8.0 years ago simarsidhu25 • 0
4
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7
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3.2k
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Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger differential gene expression glmlrt()
8.1 years ago simarsidhu25 • 0
7
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5
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3.9k
views
edgeR effects of design on testing main effects and interactions
edger glmfit glmlrt()
updated 9.1 years ago by ★ 28k • written 9.1 years ago by • 0
4
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8
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2.1k
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EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger glmlrt() differential expression design and contrast matrix
updated 9.5 years ago by 52k • written 9.5 years ago by • 0
5
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7
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4.3k
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How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger rnaseq glmlrt()
updated 9.8 years ago by 67k • written 9.8 years ago by • 0
6
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7
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7.5k
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EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR glmLRT() multiple factor design multiple testing correction
updated 10.0 years ago by ★ 28k • written 10.0 years ago by ▴ 80
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Comment: PCA of different bacterial species by Jeremy • 0
Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…
Comment: RnBeads::combine() - error? by Urotree • 0
pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…
Comment: RnBeads::combine() - error? by Urotree • 0
![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…
Comment: RnBeads::combine() - error? by Urotree • 0
rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …
Answer: How to increase font for gene name and increase arrow size for GVIZ's ( UcscTra by ming • 0
`fontsize` for title font size, `fontsize.group` for gene symbol font size tx.track <- GeneRegionTrack(hg38.gtf, …
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