Bioconductor Glmlrt()

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edger design matrix glmlrt() glmQFTest() paired design

6.4 years ago oakhamwolf • 0

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2.3k

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EdgeR glmlrt() ql f-test

8.4 years ago • updated 7.7 years ago elineverbon ▴ 20

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4.1k

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edger contrast covariate glmlrt()

8.0 years ago Jeff Skinner • 0

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edger differential gene expression glmlrt()

8.3 years ago simarsidhu25 • 0

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3.3k

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edger differential gene expression glmlrt()

8.3 years ago simarsidhu25 • 0

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edger glmfit glmlrt()

updated 9.4 years ago by Aaron Lun ★ 28k • written 9.4 years ago by cadeans • 0

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edger glmlrt() differential expression design and contrast matrix

updated 9.8 years ago by Gordon Smyth 52k • written 9.8 years ago by carlgdeboer • 0

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edger rnaseq glmlrt()

updated 10.1 years ago by James W. MacDonald 68k • written 10.1 years ago by MBWatson • 0

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edgeR glmLRT() multiple factor design multiple testing correction

updated 10.2 years ago by Aaron Lun ★ 28k • written 10.2 years ago by Ekarl2 ▴ 80

9 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

what the test method for enrichGO in clusterProfiler?

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