Showing : glmlrt() • reset
2
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EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger design matrix glmlrt() glmQFTest() paired design
6.1 years ago oakhamwolf • 0
4
votes
15
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2.1k
views
Adjusting for procedural effect and deciding on statistical test
EdgeR glmlrt() ql f-test
8.1 years ago • updated 7.4 years ago elineverbon ▴ 20
0
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7
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3.9k
views
Computing contrasts with a covariate using edgeR glmLRT()
edger contrast covariate glmlrt()
7.6 years ago Jeff Skinner • 0
1
vote
6
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1.3k
views
design of edgeR GLM test
edger differential gene expression glmlrt()
8.0 years ago • updated 7.9 years ago simarsidhu25 • 0
4
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7
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3.1k
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Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger differential gene expression glmlrt()
8.0 years ago simarsidhu25 • 0
7
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5
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3.9k
views
edgeR effects of design on testing main effects and interactions
edger glmfit glmlrt()
updated 9.1 years ago by ★ 28k • written 9.1 years ago by • 0
4
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8
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2.1k
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EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger glmlrt() differential expression design and contrast matrix
updated 9.4 years ago by 52k • written 9.4 years ago by • 0
5
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7
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4.2k
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How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger rnaseq glmlrt()
updated 9.7 years ago by 67k • written 9.7 years ago by • 0
6
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7
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7.5k
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EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR glmLRT() multiple factor design multiple testing correction
updated 9.9 years ago by ★ 28k • written 9.9 years ago by ▴ 80
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Answer: What type of counts data to import for performing Isoform analysis in edgeR by Gordon Smyth 52k
I haven't used nf-core but, from browsing through their documentation, they didn't seem to have any pipeline for differential transcript ex…
Comment: What type of counts data to import for performing Isoform analysis in edgeR by Gordon Smyth 52k
The poster needs to run Salmon with `--numGibbsSamples=50`. I suspect that nf-core just won't do that, so Salmon needs to be run directly.
Comment: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.6k
Probably nf-core did not run with bootstrap/gibbs replicates. Check the code. See salmon docs on how to turn that on.
Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10
@atpoint Thank you. I did wanted to try using the `quant.sf` files from the `salmon` run by referring edgeR user guide example `4.6 Differe…
Comment: athPkgBuilder data source :missing probesets by bobihanigujjar • 0
In this article, we'll explore the demand for unbranded BJJ Gis and the benefits of choosing unbranded Gis for customization. [does anyone …
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Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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