Bioconductor GlmTreat

Showing : glmTreat • reset

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2.4k

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go DE edger rnaseq glmTreat

updated 4.7 years ago by Gordon Smyth 52k • written 4.7 years ago by Raito92 ▴ 60

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2.2k

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edgeR glmTreat significance testing

updated 5.1 years ago by Yunshun Chen ▴ 900 • written 5.1 years ago by flemi221 • 0

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1.4k

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edger differential gene expression glmtreat

updated 6.2 years ago by Gordon Smyth 52k • written 6.2 years ago by svlachavas ▴ 840

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1.7k

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edgeR glmTreat analysis of deviance

updated 7.1 years ago by Ryan C. Thompson ★ 7.9k • written 7.1 years ago by BharathAnanth ▴ 80

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1.4k

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roast edgeR glmtreat

updated 8.3 years ago by Aaron Lun ★ 28k • written 8.3 years ago by b.nota ▴ 370

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1.2k

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edgeR glmTreat

updated 8.5 years ago by Yunshun Chen ▴ 900 • written 8.6 years ago by James W. MacDonald 67k

6 results • Page 1 of 1

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Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

@[sandtrix][1] This is useful information. [1]: https://sandtrix.io

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Votes

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

Awards • All

Teacher to dsull ▴ 40