Bioconductor GlmTreat

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2.3k

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go DE edger rnaseq glmTreat

updated 4.6 years ago by Gordon Smyth 51k • written 4.6 years ago by Raito92 ▴ 60

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2.1k

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edgeR glmTreat significance testing

updated 5.0 years ago by Yunshun Chen ▴ 870 • written 5.0 years ago by flemi221 • 0

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1.4k

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edger differential gene expression glmtreat

updated 6.0 years ago by Gordon Smyth 51k • written 6.0 years ago by svlachavas ▴ 830

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1.7k

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edgeR glmTreat analysis of deviance

updated 6.9 years ago by Ryan C. Thompson ★ 7.9k • written 6.9 years ago by BharathAnanth ▴ 80

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1.4k

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roast edgeR glmtreat

updated 8.2 years ago by Aaron Lun ★ 28k • written 8.2 years ago by b.nota ▴ 370

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1.2k

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edgeR glmTreat

updated 8.4 years ago by Yunshun Chen ▴ 870 • written 8.4 years ago by James W. MacDonald 67k

6 results • Page 1 of 1

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Comment: Volcano plot has many values around zero by Michael Love 42k

It's positive over zero or nearly so.

Answer: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

You've got genes with supposedly have a 32-fold difference, and the adjusted p-values are < 1x10-10? That seems odd.

Comment: Volcano plot has many values around zero by mjun • 0

Why this cluster close to 0 with low p value is so distinctive. Is this common? What does it mean and why? Thanks

Comment: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

I don't think this is evidence that the dataset is invalid. It's evidence that your experiment is underpowered, and/or your experimental c…

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

Have you read the totalVI documentation?, which says: > **Important** > We do not recommend using totalVI denoised values in other differ…

Votes

Comment: Weird looking volcano plot

Volcano plot has many values around zero

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

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Popular Question to Dario Strbenac ★ 1.5k

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k