Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
glmLRT()
•
reset
2
votes
2
replies
1.5k
views
EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger
design matrix
glmlrt()
glmQFTest()
paired design
6.3 years ago
oakhamwolf
• 0
4
votes
15
replies
2.2k
views
Adjusting for procedural effect and deciding on statistical test
EdgeR
glmlrt()
ql f-test
8.3 years ago • updated 7.6 years ago
elineverbon
▴ 20
0
votes
7
replies
4.0k
views
Computing contrasts with a covariate using edgeR glmLRT()
edger
contrast
covariate
glmlrt()
7.8 years ago
Jeff Skinner
• 0
1
vote
6
replies
1.4k
views
design of edgeR GLM test
edger
differential gene expression
glmlrt()
8.1 years ago
simarsidhu25
• 0
4
votes
7
replies
3.2k
views
Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger
differential gene expression
glmlrt()
8.1 years ago
simarsidhu25
• 0
7
votes
5
replies
4.0k
views
edgeR effects of design on testing main effects and interactions
edger
glmfit
glmlrt()
updated 9.2 years ago by
Aaron Lun
★ 28k • written 9.2 years ago by
cadeans
• 0
4
votes
8
replies
2.1k
views
EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger
glmlrt()
differential expression
design and contrast matrix
updated 9.6 years ago by
Gordon Smyth
52k • written 9.6 years ago by
carlgdeboer
• 0
5
votes
7
replies
4.3k
views
How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger
rnaseq
glmlrt()
updated 9.9 years ago by
James W. MacDonald
67k • written 9.9 years ago by
MBWatson
• 0
6
votes
7
replies
7.5k
views
EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR
glmLRT()
multiple factor design
multiple testing correction
updated 10.1 years ago by
Aaron Lun
★ 28k • written 10.1 years ago by
Ekarl2
▴ 80
9 results • Page
1 of 1
Recent ...
Replies
Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
by
ATpoint
★ 4.6k
The vignette covers batch effects as per the authors best practice, please read it and consider following it.
Comment: DESeq2 analysis with transcript counts
by
kahunroleh
• 0
Thanks for sharing the solution. I also face this problem. [nulls][1] [1]: https://nulls-brawl-apk.fr/
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
kahunroleh
• 0
Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…
Comment: displaying the differential expression with deseq2 over 4X2 samples with the in
by
Martijn
• 0
thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…
Comment: plyranges: find exact GRanges match keeping metadata columns
by
alexis.weinreb
• 0
Thank you, this does clarify the available options.
Votes
Answer: Reducing and aggregating GRanges with gaps using plyranges
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Awards
• All
Popular Question
to
Crystal571
• 0
Popular Question
to
adam_casas
• 0
Popular Question
to
shepherl
4.1k
Teacher
to
Axel Klenk
★ 1.1k
Popular Question
to
Gordon Smyth
52k
Locations
• All
Germany,
2 minutes ago
WEHI, Melbourne, Australia,
32 minutes ago
UPF, Barcelona, Spain,
1 hour ago
India,
1 hour ago
Ghent University, Belgium,
2 hours ago
Traffic: 745 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6