Showing : ggbio • reset
1
vote
5
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1.3k
views
how can I add a label for granges using the geom_rect ?
ggbio
2.2 years ago 潘晓光 • 0
0
votes
7
replies
1.5k
views
Uniform window size for different genes
ggbio
3.0 years ago rbenel ▴ 40
0
votes
0
replies
862
views
Remove space on x-axis
ggbio
3.4 years ago sophieagger • 0
0
votes
2
replies
1.3k
views
Error in GenomeInfoDb:::makeNewSeqnames
GenomeInfoDb ggbio
4.0 years ago Konstantinos Yeles ▴ 80
18
votes
4
replies
2.1k
views
`ggbio` package can't be loaded
ggbio
4.1 years ago Batool ▴ 370
0
votes
2
replies
1.5k
views
ggbio autoplot() error "object of type 'symbol' is not subsettable"
ggbio
4.2 years ago Andrew • 0
0
votes
2
replies
946
views
Does biovizBase contain a genesymbol data set for other model organisms?
biovizBase ggbio
updated 4.8 years ago by 67k • written 4.8 years ago by ▴ 20
0
votes
2
replies
1.1k
views
ggbio tracks not aligned when legend present in one track
ggbio
updated 5.2 years ago by ★ 11k • written 5.2 years ago by ▴ 740
0
votes
6
replies
2.6k
views
Error while attempting to forge BSgenome data package
bsgenome ggbio
updated 5.3 years ago by • 0 • written 10.3 years ago by • 0
1
vote
3
replies
1.9k
views
ggbio - change transcript label sizes
ggbio annotation
updated 2.8 years ago by ▴ 50 • written 5.4 years ago by ★ 4.0k
12
votes
7
replies
4.9k
views
Plot ggplot2 and ggbio Images Together
ggplot2 ggbio cowplot
updated 5.5 years ago by ★ 1.5k • written 9.7 years ago by ▴ 370
0
votes
0
replies
1.0k
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio ideogram autoplot
6.1 years ago gpwhiz ▴ 10
0
votes
0
replies
1.0k
views
Recommendation for visualizing ChIP-qPCR data?
R chip-seq histone chip-seq ggbio
6.1 years ago Ramiro Magno ▴ 100
1
vote
2
replies
1.9k
views
ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
ggbio ggplot2
6.2 years ago t.fadason ▴ 10
0
votes
9
replies
3.5k
views
Featurecounts issue for counting exons: Not matching total counts mapped for specific gene
featurecounts Rsubread ggbio
updated 6.2 years ago by ★ 3.6k • written 6.2 years ago by ▴ 40
0
votes
0
replies
1.1k
views
xlim not working with ggbio
ggbio
6.3 years ago marisa.e.miller • 0
1
vote
1
reply
1.2k
views
ggbio labels with ggrepeal on circos plot
ggbio r graphics
6.3 years ago gamma.jian ▴ 10
2
votes
2
replies
1.2k
views
aes label in ggbio_1.26.1 with ggplot2_3.0.0
ggbio ggplot2
6.4 years ago Lescai, Francesco ▴ 380
0
votes
2
replies
1.1k
views
visualization of chromatin interaction networks
gviz ggbio karyotypeR
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 670
0
votes
0
replies
2.1k
views
ggbio Error: Don't know how to add o to a plot
software error ggbio ggplot2
6.6 years ago zhe ▴ 20
0
votes
0
replies
952
views
Circular plot of transcript models with ggbio.
ggbio
7.3 years ago Charles Plessy ▴ 180
0
votes
2
replies
1.9k
views
Cytoband information for rice
rice cytoband circlize ggbio ideogram
7.6 years ago • updated 7.5 years ago Didi ▴ 10
2
votes
5
replies
3.8k
views
Error in GenomeInfoDb:::getDanglingSeqlevels
ggbio
7.6 years ago Bogdan ▴ 670
0
votes
1
reply
3.5k
views
an error in ggbio: "Breaks and labels are different lengths"
ggbio ggplot2
7.8 years ago Bogdan ▴ 670
0
votes
1
reply
1.6k
views
In ggbio, plot transcripts from a TxDb with gene labels
ggbio
updated 7.9 years ago by ★ 11k • written 7.9 years ago by • 0
1
vote
4
replies
3.2k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc ucsctrack ggbio Gviz hg19
updated 7.9 years ago by ▴ 10 • written 7.9 years ago by ▴ 10
1
vote
3
replies
3.2k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 8.0 years ago by ★ 11k • written 8.0 years ago by ▴ 10
2
votes
4
replies
1.6k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 8.1 years ago by ★ 11k • written 8.1 years ago by ▴ 10
0
votes
2
replies
1.6k
views
tracks () function from ggbio does not allow italic expression in the title
ggbio ggplot2 title typography
8.4 years ago • updated 8.1 years ago oswaldo.lorenzo ▴ 10
0
votes
3
replies
1.7k
views
ggbio: integrate different plots
ggbio
updated 8.1 years ago by ★ 11k • written 8.1 years ago by • 0
0
votes
1
reply
1.5k
views
ggbio tracks issue
ggbio tracks
8.2 years ago longoka • 0
7
votes
9
replies
3.3k
views
Install ggbio development version
ggbio development package installation
updated 8.3 years ago by 25k • written 8.3 years ago by ▴ 10
1
vote
1
reply
1.4k
views
Add main title to ggbio's karyogram
ggbio karyogram granges
updated 8.3 years ago by ★ 11k • written 8.3 years ago by ▴ 80
0
votes
1
reply
2.2k
views
Missing levels in legend using autoplot () + scale_color_manual () functions
ggbio ggplot2 legend bioconductor karyiogram
8.4 years ago oswaldo.lorenzo ▴ 10
1
vote
1
reply
1.9k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
8.4 years ago oswaldo.lorenzo ▴ 10
0
votes
1
reply
2.6k
views
Ideogram not alligned with ggbio and tracks()
ggbio ggplot2
updated 8.4 years ago by ▴ 10 • written 8.8 years ago by ▴ 10
0
votes
2
replies
1.3k
views
ggbio: untransformed coordinate when using `tracks` function with IRanges or numeric value as `xlim`
ggbio tracks
updated 8.4 years ago by ▴ 10 • written 8.4 years ago by ▴ 20
2
votes
3
replies
1.9k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
8.4 years ago oswaldo.lorenzo ▴ 10
0
votes
0
replies
1.2k
views
Highlighting Significantly Associated Sites on Manhattan Plot using ggbio
ggbio manhattan plot plotGrandLinear
8.5 years ago graggsd • 0
0
votes
1
reply
1.4k
views
problem loading gwascat and ggbio
gwascat ggbio Mac
8.6 years ago jameshunterbr • 0
0
votes
0
replies
1.0k
views
ggbio: axis in karyogram line graph overlay
ggbio
8.7 years ago map2085 ▴ 40
0
votes
1
reply
1.3k
views
ggbio axis in karyogram
ggbio
updated 2.4 years ago by • 0 • written 8.7 years ago by ▴ 40
0
votes
0
replies
1.1k
views
Cannot replicate VCF plot from help page
ggbio
8.7 years ago kevin.rue ▴ 350
0
votes
0
replies
1.2k
views
ggbio plotIdeogram(..., zoom.region) broken ?
ggbio biovizBase
8.7 years ago kevin.rue ▴ 350
0
votes
1
reply
1.5k
views
ggbio OrganismDb autoplot - reduce vs identity
ggbio autoplot
updated 8.7 years ago by 67k • written 8.7 years ago by ▴ 380
0
votes
2
replies
1.6k
views
Cannot replicate circle plot vignette output in ggbio devel
software error ggbio circle plot
updated 8.8 years ago by ★ 11k • written 8.8 years ago by ▴ 90
3
votes
2
replies
1.9k
views
Cannot use color/ fill arguments outside of aes() in ggbio karyogram layout
ggbio
8.9 years ago Mario Saare ▴ 20
0
votes
2
replies
1.3k
views
puzzling ggbio behaviour when plotting a detail of a track
ggbio
updated 9.0 years ago by 67k • written 9.0 years ago by ▴ 160
2
votes
3
replies
2.5k
views
No color support in ggbio for autoplot
ggbio autoplot color vignette
updated 9.0 years ago by ▴ 10 • written 9.0 years ago by • 0
1
vote
4
replies
2.7k
views
Cannot get ggbio autoplot to run successfully on R 3.2 (3.2.2 or 3.2.3)
ggbio ggplot2 autoplot bioconductor gene models
updated 9.0 years ago by ▴ 10 • written 9.1 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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