Showing : ggbio • reset
1
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5
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1.3k
views
how can I add a label for granges using the geom_rect ?
ggbio
2.4 years ago 潘晓光 • 0
0
votes
7
replies
1.7k
views
Uniform window size for different genes
ggbio
3.3 years ago rbenel ▴ 40
0
votes
0
replies
938
views
Remove space on x-axis
ggbio
3.6 years ago sophieagger • 0
0
votes
2
replies
1.4k
views
Error in GenomeInfoDb:::makeNewSeqnames
GenomeInfoDb ggbio
4.3 years ago Konstantinos Yeles ▴ 80
18
votes
4
replies
2.3k
views
`ggbio` package can't be loaded
ggbio
4.3 years ago Batool ▴ 370
0
votes
2
replies
1.7k
views
ggbio autoplot() error "object of type 'symbol' is not subsettable"
ggbio
4.4 years ago Andrew • 0
0
votes
2
replies
1.0k
views
Does biovizBase contain a genesymbol data set for other model organisms?
biovizBase ggbio
updated 5.1 years ago by 68k • written 5.1 years ago by ▴ 20
0
votes
2
replies
1.1k
views
ggbio tracks not aligned when legend present in one track
ggbio
updated 5.4 years ago by ★ 11k • written 5.4 years ago by ▴ 740
0
votes
6
replies
2.8k
views
Error while attempting to forge BSgenome data package
bsgenome ggbio
updated 5.5 years ago by • 0 • written 10.5 years ago by • 0
1
vote
3
replies
1.9k
views
ggbio - change transcript label sizes
ggbio annotation
updated 3.0 years ago by ▴ 50 • written 5.7 years ago by ★ 4.0k
12
votes
7
replies
5.1k
views
Plot ggplot2 and ggbio Images Together
ggplot2 ggbio cowplot
updated 5.7 years ago by ★ 1.5k • written 9.9 years ago by ▴ 370
0
votes
0
replies
1.1k
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio ideogram autoplot
6.3 years ago gpwhiz ▴ 10
0
votes
0
replies
1.1k
views
Recommendation for visualizing ChIP-qPCR data?
R chip-seq histone chip-seq ggbio
6.4 years ago Ramiro Magno ▴ 100
1
vote
2
replies
1.9k
views
ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
ggbio ggplot2
6.4 years ago t.fadason ▴ 10
0
votes
9
replies
3.7k
views
Featurecounts issue for counting exons: Not matching total counts mapped for specific gene
featurecounts Rsubread ggbio
updated 6.4 years ago by ★ 3.6k • written 6.4 years ago by ▴ 60
0
votes
0
replies
1.2k
views
xlim not working with ggbio
ggbio
6.5 years ago marisa.e.miller • 0
1
vote
1
reply
1.3k
views
ggbio labels with ggrepeal on circos plot
ggbio r graphics
6.6 years ago gamma.jian ▴ 10
2
votes
2
replies
1.2k
views
aes label in ggbio_1.26.1 with ggplot2_3.0.0
ggbio ggplot2
6.6 years ago Lescai, Francesco ▴ 380
0
votes
2
replies
1.2k
views
visualization of chromatin interaction networks
gviz ggbio karyotypeR
updated 6.8 years ago by ★ 28k • written 6.8 years ago by ▴ 670
0
votes
0
replies
2.1k
views
ggbio Error: Don't know how to add o to a plot
software error ggbio ggplot2
6.8 years ago zhe ▴ 20
0
votes
0
replies
989
views
Circular plot of transcript models with ggbio.
ggbio
7.5 years ago Charles Plessy ▴ 180
0
votes
2
replies
2.0k
views
Cytoband information for rice
rice cytoband circlize ggbio ideogram
7.8 years ago Didi ▴ 10
2
votes
5
replies
3.9k
views
Error in GenomeInfoDb:::getDanglingSeqlevels
ggbio
7.8 years ago Bogdan ▴ 670
0
votes
1
reply
3.6k
views
an error in ggbio: "Breaks and labels are different lengths"
ggbio ggplot2
8.0 years ago Bogdan ▴ 670
0
votes
1
reply
1.7k
views
In ggbio, plot transcripts from a TxDb with gene labels
ggbio
updated 8.2 years ago by ★ 11k • written 8.2 years ago by • 0
1
vote
4
replies
3.4k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc ucsctrack ggbio Gviz hg19
updated 8.2 years ago by ▴ 10 • written 8.2 years ago by ▴ 10
1
vote
3
replies
3.3k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 8.2 years ago by ★ 11k • written 8.2 years ago by ▴ 10
2
votes
4
replies
1.6k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 8.3 years ago by ★ 11k • written 8.3 years ago by ▴ 10
0
votes
2
replies
1.7k
views
tracks () function from ggbio does not allow italic expression in the title
ggbio ggplot2 title typography
8.6 years ago • updated 8.3 years ago oswaldo.lorenzo ▴ 10
0
votes
3
replies
1.8k
views
ggbio: integrate different plots
ggbio
updated 8.4 years ago by ★ 11k • written 8.4 years ago by • 0
0
votes
1
reply
1.5k
views
ggbio tracks issue
ggbio tracks
8.4 years ago longoka • 0
7
votes
9
replies
3.4k
views
Install ggbio development version
ggbio development package installation
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 10
1
vote
1
reply
1.4k
views
Add main title to ggbio's karyogram
ggbio karyogram granges
updated 8.5 years ago by ★ 11k • written 8.5 years ago by ▴ 80
0
votes
1
reply
2.3k
views
Missing levels in legend using autoplot () + scale_color_manual () functions
ggbio ggplot2 legend bioconductor karyiogram
8.6 years ago oswaldo.lorenzo ▴ 10
1
vote
1
reply
2.0k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
8.6 years ago oswaldo.lorenzo ▴ 10
0
votes
1
reply
2.7k
views
Ideogram not alligned with ggbio and tracks()
ggbio ggplot2
updated 8.6 years ago by ▴ 10 • written 9.0 years ago by ▴ 10
0
votes
2
replies
1.4k
views
ggbio: untransformed coordinate when using `tracks` function with IRanges or numeric value as `xlim`
ggbio tracks
updated 8.6 years ago by ▴ 10 • written 8.7 years ago by ▴ 20
2
votes
3
replies
2.0k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
8.6 years ago oswaldo.lorenzo ▴ 10
0
votes
0
replies
1.2k
views
Highlighting Significantly Associated Sites on Manhattan Plot using ggbio
ggbio manhattan plot plotGrandLinear
8.7 years ago graggsd • 0
0
votes
1
reply
1.4k
views
problem loading gwascat and ggbio
gwascat ggbio Mac
8.8 years ago jameshunterbr • 0
0
votes
0
replies
1.0k
views
ggbio: axis in karyogram line graph overlay
ggbio
8.9 years ago map2085 ▴ 40
0
votes
1
reply
1.3k
views
ggbio axis in karyogram
ggbio
updated 2.6 years ago by • 0 • written 8.9 years ago by ▴ 40
0
votes
0
replies
1.1k
views
Cannot replicate VCF plot from help page
ggbio
8.9 years ago kevin.rue ▴ 350
0
votes
0
replies
1.3k
views
ggbio plotIdeogram(..., zoom.region) broken ?
ggbio biovizBase
8.9 years ago kevin.rue ▴ 350
0
votes
1
reply
1.5k
views
ggbio OrganismDb autoplot - reduce vs identity
ggbio autoplot
updated 8.9 years ago by 68k • written 8.9 years ago by ▴ 380
0
votes
2
replies
1.6k
views
Cannot replicate circle plot vignette output in ggbio devel
software error ggbio circle plot
updated 9.1 years ago by ★ 11k • written 9.1 years ago by ▴ 90
3
votes
2
replies
2.0k
views
Cannot use color/ fill arguments outside of aes() in ggbio karyogram layout
ggbio
9.1 years ago Mario Saare ▴ 20
0
votes
2
replies
1.4k
views
puzzling ggbio behaviour when plotting a detail of a track
ggbio
updated 9.2 years ago by 68k • written 9.2 years ago by ▴ 160
2
votes
3
replies
2.6k
views
No color support in ggbio for autoplot
ggbio autoplot color vignette
updated 9.2 years ago by ▴ 10 • written 9.2 years ago by • 0
1
vote
4
replies
2.8k
views
Cannot get ggbio autoplot to run successfully on R 3.2 (3.2.2 or 3.2.3)
ggbio ggplot2 autoplot bioconductor gene models
updated 9.2 years ago by ▴ 10 • written 9.3 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Votes
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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