Bioconductor Gff3

Showing : gff3 • reset

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dexseq python gtf gff3 annotation

4.5 years ago Raito92 ▴ 60

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2.2k

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annotation gff3 gff genome

updated 5.2 years ago by Michael Lawrence ★ 11k • written 5.2 years ago by mictadlo ▴ 10

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parclip bedtools bed files gff3

6.8 years ago linuxborg2 • 0

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txdb gff3 polycistronic transcript

7.0 years ago Piotr Gawronski • 0

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3.4k

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GenomicFeatures GFF3

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.6 years ago by Dario Strbenac ★ 1.5k

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3.6k

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AnnotationHub Gencode GFF3 FASTA News

9.2 years ago Sonali Arora ▴ 390

6 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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