Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
gff3
•
reset
1
vote
2
replies
2.0k
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq
python
gtf
gff3
annotation
4.9 years ago
Raito92
▴ 60
2
votes
2
replies
2.4k
views
Filtering GFF3 file
annotation
gff3
gff
genome
updated 5.6 years ago by
Michael Lawrence
★ 11k • written 5.6 years ago by
mictadlo
▴ 10
0
votes
0
replies
1.2k
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
7.2 years ago
linuxborg2
• 0
2
votes
2
replies
5.2k
views
How to prepare TxDb object using makeTxDbFromGFF with polycistronic transcripts?
txdb
gff3
polycistronic transcript
7.4 years ago
Piotr Gawronski
• 0
9
votes
3
replies
3.7k
views
Importing Gene Symbols with makeTxDbFromGFF
GenomicFeatures
GFF3
updated 8.0 years ago by
Valerie Obenchain
★ 6.8k • written 8.0 years ago by
Dario Strbenac
★ 1.6k
2
votes
0
replies
3.9k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
9.6 years ago
Sonali Arora
▴ 390
6 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
Awards
• All
Popular Question
to
bd2000
▴ 30
Popular Question
to
shepherl
4.1k
Scholar
to
Michael Love
43k
Popular Question
to
Rob
• 0
Popular Question
to
Gordon Smyth
52k
Locations
• All
United States,
14 minutes ago
San Diego,
36 minutes ago
United States,
1 hour ago
United States,
1 hour ago
United Kingdom,
1 hour ago
Traffic: 794 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6