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genomeinfodbdata
•
reset
1
vote
3
replies
1.2k
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER
GenomeInfoDbData
Bioconductor
GenomeInfoDb
written 8 months ago by
dbjohnson7
• 0
2
votes
4
replies
1.2k
views
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Install
GenomeInfoDbData
GenomeInfoDb
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
Brandon
▴ 20
0
votes
1
reply
962
views
GenomeInfoDbData version 1.2.9
GenomeInfoDbData
updated 18 months ago by
shepherl
4.1k • written 18 months ago by
remi.trimbour
• 0
4
votes
11
replies
2.8k
views
can't open mghp.osn.xsede.org
GenomeInfoDbData
genomeinfodbdata
updated 11 months ago by
merv
▴ 150 • written 20 months ago by
15753563659
▴ 60
8
votes
9
replies
1.8k
views
All three of the sites where genomeinfodbdata R packages are stored appear to be down.
GenomeInfoDbData
20 months ago
15753563659
▴ 60
0
votes
1
reply
2.0k
views
package ‘GenomeInfoDb’ could not be loaded
GenomeInfoDb
GenomeInfoDbData
updated 2.2 years ago by
ATpoint
★ 4.8k • written 2.2 years ago by
exferin
• 0
0
votes
3
replies
2.4k
views
I cannot install "microbiome"
GenomeInfoDbData
microbiome
phyloseq
updated 2.7 years ago by
Marcel Ramos
700 • written 2.7 years ago by
kikiki
• 0
0
votes
14
replies
5.6k
views
GenomeInfoDbData had non-zero exit status
DESeq2
RStudio
GenomeInfoDbData
hadnon-zeroexitstatus
updated 2.6 years ago by
wshao9
• 0 • written 2.8 years ago by
JoseR
• 0
1
vote
5
replies
1.9k
views
Unable to load mm10 genome for use with GenomicDistributions package
GenomeInfoDb
GenomeInfoDbData
GenomicDistributionsData
GenomicDistributions
2.8 years ago
rashford
• 0
0
votes
4
replies
2.4k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData
phyloseq
dada2
3.3 years ago
ymtan
• 0
1
vote
4
replies
6.2k
views
GenomeInfoDb’ could not be loaded or installed
GenomeInfoDbData
4.0 years ago
ettore64
▴ 10
1
vote
7
replies
5.4k
views
installation of package ‘GenomeInfoDbData’ had non-zero exit status
GenomeInfoDbData
"GenomeInfoDbData"package
updated 3.2 years ago by
Hervé Pagès
16k • written 4.4 years ago by
N.D.Hubot
• 0
0
votes
2
replies
1.3k
views
Error when installing pcaExplorer
install
GenomeInfoDbData
updated 5.0 years ago by
James W. MacDonald
68k • written 5.0 years ago by
lina.bird
• 0
0
votes
0
replies
768
views
Error installing GenomeInfoDbData in order to run DESeq2
genomeinfodbdata
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
hdwhitti
• 0
0
votes
1
reply
2.1k
views
Issue using ballgown
software error
ballgown
genomeinfodbdata
genomeinfodb
updated 6.6 years ago by
James W. MacDonald
68k • written 6.6 years ago by
dualeahmed
• 0
0
votes
6
replies
1.9k
views
GenomeInfoDbData not available for Mac
bioconductor
GenomeInfoDbData
6.8 years ago
svetlana.gorokhova
• 0
1
vote
7
replies
20k
views
Dada2 and GenomeInfoDbData installation
dada2
GenomeInfoDbData
updated 7.8 years ago by
jiangjing_ing
• 0 • written 7.9 years ago by
navlern
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: CluserProfiler message "No gene can be mapped"
by
Carolina
• 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE
by
James W. MacDonald
68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation
by
sergisayolspuig
▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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