Showing : genetics • reset
0
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3
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1.4k
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Limma - using both array and spot weights in lmFit
Genetics Genetics
written 17.8 years ago by ▴ 170
0
votes
0
replies
343
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
9 months ago pierre.devillemereuil • 0
0
votes
0
replies
457
views
accesing gene name RNAseq
genetics GeneticsPed Genetics
15 months ago Gülsüm • 0
0
votes
0
replies
705
views
Job: Bioinformatics Research Associate, Genomics and Genetics
genomes Genetics
16 months ago JP Carter ▴ 40
0
votes
3
replies
1.2k
views
Multiple Testing When Using Multiple Contrasts/Comparisons in DESEQ2
MultipleComparison DESeq2 Genetics contrasts RNASeq
updated 20 months ago by 68k • written 20 months ago by • 0
3
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5
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1.3k
views
calculate distance to a certain sequence in one gene
SummarizedExperiment Genetics
updated 22 months ago by 68k • written 22 months ago by • 0
0
votes
0
replies
1.2k
views
Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
2.5 years ago gaow • 0
0
votes
0
replies
1.1k
views
Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
4.1 years ago António Miguel de Jesus Domingues ▴ 510
0
votes
0
replies
1.3k
views
Job: R programmer position in genetic epidemiology/bioconductor
genetics genomics software Job
4.4 years ago Vincent J. Carey, Jr. 6.7k
2
votes
0
replies
1.5k
views
Job: developer/project management position at Harvard Medical School
softwaredevelopment Job job cloudcomputing genetics
4.4 years ago • updated 4.0 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
2.1k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
6.7 years ago • updated 4.3 years ago Luo Weijun ★ 1.6k
4
votes
6
replies
1.5k
views
Extremely big genes in annotation TxDb packages
annotation txdb AnnotationData Genetics
updated 4.7 years ago by 68k • written 4.7 years ago by ▴ 10
0
votes
1
reply
1.5k
views
DiffBind - Counting reads - counts not found
diffbind differential analysis genetics #chip-seq
updated 6.0 years ago by ★ 5.2k • written 6.0 years ago by • 0
0
votes
0
replies
1.2k
views
Job: Computational Biology / Genomics Internship at Denali Therapeutics
internship genomics genetics Job
6.0 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
984
views
package for mismatch distribution?
genetics statistics
6.1 years ago myriam.croze07 • 0
1
vote
0
replies
1.3k
views
Job: 2 Postdoc and 2 PhD positions in Regulatory genomics / Rare disease Gagneur lab, TU Munich
genomics genetics machine learning Job
6.3 years ago gagneur ▴ 10
0
votes
1
reply
1.3k
views
Normalization and Quality Control for Multiple scRNAseq Data Sets
normalization rnaseq genetics batch effect dropout
updated 6.4 years ago by ★ 13k • written 6.4 years ago by • 0
0
votes
1
reply
2.1k
views
Get Gene IDs for a list of Gene Names in R
r bioinformatics org.Hs.eg.db genetics
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
1
vote
1
reply
1.2k
views
co-evolution analysis for RNA
genetics
6.8 years ago tg369 ▴ 40
2
votes
0
replies
1.4k
views
Job: Statistical Geneticist at Denali Therapeutics, South San Francisco, CA, USA
job genetics drug development neurodegeneration Job
6.8 years ago sandmann.t ▴ 70
0
votes
0
replies
1.4k
views
Job: Postdoctoral Fellowship in Statistical Genetics and Genomics at the University of Michigan
genetics job biostatistics genomics bioinformatics Job
6.9 years ago xzhousph • 0
1
vote
3
replies
2.4k
views
Gene ID Duplicates
deseq2 genetics Tutorial
updated 6.9 years ago by 68k • written 6.9 years ago by • 0
0
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4
replies
13k
views
Normalization by DEseq
Genetics Normalization DESeq Genetics Normalization DESeq
updated 7.0 years ago by • 0 • written 14.4 years ago by ▴ 20
0
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0
replies
1.6k
views
fisher exact test pairwise associations between gene mutations
genetics
7.5 years ago wasmetqall • 0
0
votes
0
replies
1.9k
views
Job: Research Co-ordinator (Full Time)
genetics obesity molecular biology biomedical science Job
7.6 years ago njc65 • 0
0
votes
0
replies
1.4k
views
Job: Research Fellow or Junior Research Fellow, Statistical Genetics and Genomics, Australia
biostatistics genetics Job
7.8 years ago hong.lee • 0
0
votes
0
replies
1.8k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
8.1 years ago • updated 7.9 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.8k
views
Job: Postdoctoral Research Associate, Wellcome Trust-MRC Institute of Metabolic Science (Fixed Term)
genetics job genomics postdoc obesity Job
8.0 years ago njc65 • 0
0
votes
1
reply
1.4k
views
Extension to GoogleGenomics: getVariantCalls
GoogleGenomics genetics variants
8.1 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
2.0k
views
Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
8.5 years ago dtlabmskcc • 0
0
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0
replies
1.1k
views
What statistical test is appropriate? 2 categorical independent variables, 3 categorical dependent variables, biological replicates
genetics
8.6 years ago efoss ▴ 10
0
votes
0
replies
1.3k
views
homologue gene conversion worm to human
biomaRt homologue annotation genetics
8.6 years ago Nemo ▴ 80
0
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0
replies
1.2k
views
Genetic Association analysis using four siblings among which three were affected and one was normal
genetics plink linkage disequilibrium
8.7 years ago li lilingdu ▴ 450
2
votes
0
replies
1.6k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
8.7 years ago enridomenici ▴ 10
1
vote
1
reply
1.7k
views
Question about EAGenes (TCGAbiolinks)
annotation cancer biomart genetics R
updated 9.0 years ago by ▴ 260 • written 9.0 years ago by • 0
1
vote
12
replies
3.7k
views
Problem running summarizeOverlaps()
Genetics Genetics
updated 9.1 years ago by ▴ 10 • written 10.8 years ago by ▴ 140
0
votes
0
replies
1.9k
views
Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
9.7 years ago careers • 0
0
votes
0
replies
1.7k
views
Job: Come apply for our Epidemiologist, AncestryHealth role
genomics genetics design statistics scientist Job
9.7 years ago careers • 0
2
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0
replies
2.2k
views
Job: 23andMe Job Opportunities
bioinformatician job bioinformatics scientist genetics Job
9.8 years ago rgentleman ★ 5.5k
1
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0
replies
2.3k
views
Job: Bioinformatics / Biostatistics in genetic interaction analysis
high-throughput screening interactions genetics jobs image analysis Job
9.9 years ago Bernd Fischer ▴ 550
3
votes
5
replies
2.8k
views
How to Find Common Dysregulated Genes in Two or More Sets of Microarray Data?
disease genetics micro array data microarray
updated 9.9 years ago by 52k • written 9.9 years ago by ▴ 20
0
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0
replies
2.4k
views
Job: Abbvie -- Senior Manager/Associate Director, Exploratory Statistics
genomics genetics proteomics rnaseq microarray Job
10.0 years ago Feng Hong • 0
0
votes
1
reply
4.0k
views
DESeq2 - factor base level changes the DE genes.
RNASeq Genetics DESeq2 RNASeq Genetics DESeq2
updated 10.4 years ago by 43k • written 10.6 years ago by ★ 13k
1
vote
1
reply
2.0k
views
Question about decideTestsDGE()
Genetics edgeR
updated 10.4 years ago by 52k • written 10.6 years ago by ▴ 260
2
votes
0
replies
2.5k
views
Job: Job Opening: Computational Biologist @ Genentech Bioinformatics
Job Sequencing Genetics Cancer
updated 10.5 years ago by ★ 8.2k • written 10.5 years ago by ★ 11k
0
votes
3
replies
2.3k
views
Error running makeTranscriptDbFromGFF in GenomicFeatures
Genetics TranscriptDb GenomicFeatures
updated 10.5 years ago by ★ 11k • written 10.5 years ago by ▴ 260
0
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0
replies
2.4k
views
Plot exon number per gene and transcript lengths
Genetics TranscriptDb GenomicFeatures
10.5 years ago Jon Bråte ▴ 260
0
votes
8
replies
3.2k
views
Expected number of DE genes?
Genetics edgeR DESeq2 Genetics edgeR DESeq2
updated 10.6 years ago by ▴ 750 • written 10.6 years ago by ▴ 140
0
votes
2
replies
1.6k
views
Can my problem be addressed with Bioconductor?
Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO
updated 10.7 years ago by 68k • written 10.7 years ago by ★ 13k
0
votes
2
replies
2.3k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics GO Regression Cancer TranscriptDb Genetics GO Regression Cancer TranscriptDb
updated 10.8 years ago by ▴ 570 • written 10.8 years ago by 16k
50 results • Page 1 of 1
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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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