Showing : genesis • reset
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110
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Conditional analysis
GENESIS
5 weeks ago SuperDad • 0
0
votes
1
reply
271
views
GENESIS: error in crossprod
GENESIS
4 months ago Stephanie M. Gogarten ▴ 870
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2
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492
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GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS GWASTools GDSfile
updated 6 months ago by ▴ 870 • written 7 months ago by • 0
0
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2
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457
views
SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS SeqVarTools
updated 7 months ago by ▴ 870 • written 7 months ago by • 0
1
vote
1
reply
528
views
HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS autosome-only=FALSE? PCAir
updated 7 months ago by 66k • written 7 months ago by ▴ 10
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325
views
How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
8 months ago mailtoshivam13 • 0
2
votes
5
replies
878
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assocTestSingle output with GxE
GENESIS
updated 12 months ago by ▴ 870 • written 12 months ago by • 0
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1
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483
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Reference categories for factors
assocTestSingle GENESIS
written 16 months ago by • 0
0
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2
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761
views
kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix GENESIS Plants
20 months ago Monica • 0
1
vote
2
replies
4.3k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 3.4 years ago by • 0 • written 4.6 years ago by • 0
0
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1
reply
891
views
Approximations to Est and Est.SE in GENESIS
GENESIS
3.6 years ago Stephanie M. Gogarten ▴ 870
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0
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717
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X chromosome analyses for males in GENESIS
GENESIS
3.6 years ago Stephanie M. Gogarten ▴ 870
0
votes
3
replies
1.5k
views
Alternate allele for GENESIS?
genesis effect allele association analysis
updated 3.9 years ago by ▴ 870 • written 3.9 years ago by • 0
0
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1
reply
826
views
using GENESIS R package with non-human species
genesis gwastools
3.9 years ago Stephanie M. Gogarten ▴ 870
0
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2
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948
views
Association testing model in GENESIS
genesis
updated 4.0 years ago by ▴ 870 • written 4.0 years ago by • 0
0
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1
reply
1.2k
views
GENESIS multiple gds files
genesis gds SeqVarData
updated 4.0 years ago by ▴ 870 • written 4.1 years ago by • 0
0
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8
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1.6k
views
Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
4.4 years ago alipka ▴ 10
2
votes
1
reply
709
views
Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 4.4 years ago by ▴ 870 • written 4.4 years ago by ▴ 10
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0
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903
views
Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
4.6 years ago astridite • 0
2
votes
1
reply
838
views
Why did the Wald test disappear from GENESIS?
genesis
4.6 years ago Stephanie M. Gogarten ▴ 870
1
vote
3
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1.4k
views
Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
4.7 years ago Corey.Cox • 0
1
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1
reply
1.0k
views
Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 4.7 years ago by ▴ 870 • written 4.7 years ago by ▴ 10
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votes
6
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1.5k
views
Interpreting the output of score test using GENESIS
genesis output score
updated 4.7 years ago by ▴ 870 • written 4.7 years ago by ▴ 10
2
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4
replies
1.1k
views
Sporadic missingness with admixmmap
genesis admixmap
updated 4.8 years ago by ▴ 870 • written 4.8 years ago by • 0
0
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3
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1.8k
views
Can't install Genesis
Genesis Installation
updated 4.9 years ago by ★ 6.5k • written 4.9 years ago by ▴ 10
0
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3
replies
1.2k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 4.9 years ago by ▴ 70 • written 4.9 years ago by • 0
6
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11
replies
2.8k
views
Genesis: doubts with admixMAPMM
genesis admixmap
updated 5.2 years ago by ▴ 870 • written 5.2 years ago by • 0
0
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1
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942
views
betas for binary outcome
genesis
5.3 years ago Stephanie M. Gogarten ▴ 870
0
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13
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2.4k
views
GENESIS pcrelate() write gds file doesn't work
genesis pcrelate gds
updated 5.3 years ago by ▴ 870 • written 5.3 years ago by • 0
4
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2
replies
1.9k
views
Imputed dosages in GENESIS
genesis gwastools seqarray
5.7 years ago • updated 5.4 years ago Stephanie M. Gogarten ▴ 870
0
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1
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1.0k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.4 years ago naglemi ▴ 10
1
vote
1
reply
967
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 5.6 years ago by ▴ 70 • written 5.6 years ago by ▴ 10
1
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1
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974
views
GENESIS pcrelate() to load gds file and continue where the function broke
genesis pcrrelate gds
updated 5.7 years ago by ▴ 870 • written 5.7 years ago by • 0
0
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1
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941
views
Using previously calculated PCs in GENESIS
genesis snprelate
5.8 years ago Stephanie M. Gogarten ▴ 870
0
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1
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1.0k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 5.8 years ago by ▴ 30 • written 5.8 years ago by ▴ 10
0
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1
reply
814
views
selecting SNPs and samples in GENESIS
genesis
5.9 years ago Stephanie M. Gogarten ▴ 870
0
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3
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1.3k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 5.9 years ago by ▴ 70 • written 5.9 years ago by ▴ 10
3
votes
4
replies
1.6k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 5.9 years ago by ▴ 70 • written 5.9 years ago by ▴ 10
2
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8
replies
1.7k
views
GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
6.1 years ago GENOMIC_region • 0
0
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7
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1.9k
views
GENESIS: king2mat: subscript out of bounds
genesis
6.1 years ago Stephanie M. Gogarten ▴ 870
40 results • Page 1 of 1
Recent ...
Replies
Comment: How to get the DMR? by xuz • 0
These are from downstream association analysis result; The pipeline is only for data preprocessing and quality control. P values are associ…
Comment: Epicv2 conversion fail by Alex • 0
Thank you for your support. > In the double conversion, the output you supplied indicates that the number of probes is the same (453093)? …
Comment: OST to PST Converter Software by Deepak • 0
One can also check out a professional solution named Weeom OST to PST Converter Software. It is a reliable and secure solution to repair co…
Comment: How to search Pubmed Central or other fulltext literature base using regex? by Abiologist • 0
Apologies - you are potentially correct (assuming there is no answer within Bioconductor). I'm having trouble finding a suitable venue for …
Comment: How to search Pubmed Central or other fulltext literature base using regex? by ATpoint ★ 4.2k
This is off-topic as entirely unrelated to Bioconductor. You seem to be crossposting this to > 1 community, please at least leave a link to…
Votes
C: ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Help with error running DiffBind
Comment: Difference between enrichGO results and Enrichr website results
A: Unable to install the package "tissuesGeneExpression"
Unable to install the package "tissuesGeneExpression"
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