Showing : genesis • reset
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258
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Conditional analysis
GENESIS
7 months ago SuperDad • 0
0
votes
1
reply
498
views
GENESIS: error in crossprod
GENESIS
11 months ago Stephanie M. Gogarten ▴ 890
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votes
2
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793
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GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS GWASTools GDSfile
updated 13 months ago by ▴ 890 • written 13 months ago by • 0
0
votes
2
replies
670
views
SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS SeqVarTools
updated 14 months ago by ▴ 890 • written 14 months ago by • 0
1
vote
1
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831
views
HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS autosome-only=FALSE? PCAir
updated 14 months ago by 67k • written 14 months ago by ▴ 10
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530
views
How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
15 months ago mailtoshivam13 • 0
2
votes
5
replies
1.1k
views
assocTestSingle output with GxE
GENESIS
updated 18 months ago by ▴ 890 • written 19 months ago by • 0
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1
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591
views
Reference categories for factors
assocTestSingle GENESIS
written 23 months ago by • 0
0
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2
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950
views
kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix GENESIS Plants
2.2 years ago Monica • 0
1
vote
2
replies
4.8k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 3.9 years ago by • 0 • written 5.1 years ago by • 0
0
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1
reply
1.1k
views
Approximations to Est and Est.SE in GENESIS
GENESIS
4.1 years ago Stephanie M. Gogarten ▴ 890
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0
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843
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X chromosome analyses for males in GENESIS
GENESIS
4.2 years ago Stephanie M. Gogarten ▴ 890
0
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3
replies
1.7k
views
Alternate allele for GENESIS?
genesis effect allele association analysis
updated 4.4 years ago by ▴ 890 • written 4.4 years ago by • 0
0
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1
reply
976
views
using GENESIS R package with non-human species
genesis gwastools
4.5 years ago Stephanie M. Gogarten ▴ 890
0
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2
replies
1.1k
views
Association testing model in GENESIS
genesis
updated 4.5 years ago by ▴ 890 • written 4.5 years ago by • 0
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1
reply
1.4k
views
GENESIS multiple gds files
genesis gds SeqVarData
updated 4.6 years ago by ▴ 890 • written 4.6 years ago by • 0
0
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8
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1.9k
views
Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
4.9 years ago alipka ▴ 10
2
votes
1
reply
851
views
Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 5.0 years ago by ▴ 890 • written 5.0 years ago by ▴ 10
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0
replies
1.0k
views
Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
5.1 years ago astridite • 0
2
votes
1
reply
993
views
Why did the Wald test disappear from GENESIS?
genesis
5.2 years ago Stephanie M. Gogarten ▴ 890
1
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3
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1.5k
views
Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
5.2 years ago Corey.Cox • 0
1
vote
1
reply
1.2k
views
Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 5.3 years ago by ▴ 890 • written 5.3 years ago by ▴ 10
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6
replies
1.8k
views
Interpreting the output of score test using GENESIS
genesis output score
updated 5.3 years ago by ▴ 890 • written 5.3 years ago by ▴ 10
2
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4
replies
1.3k
views
Sporadic missingness with admixmmap
genesis admixmap
updated 5.3 years ago by ▴ 890 • written 5.3 years ago by • 0
0
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3
replies
2.1k
views
Can't install Genesis
Genesis Installation
updated 5.4 years ago by ★ 6.6k • written 5.4 years ago by ▴ 10
0
votes
3
replies
1.4k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 5.5 years ago by ▴ 70 • written 5.5 years ago by • 0
6
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11
replies
3.2k
views
Genesis: doubts with admixMAPMM
genesis admixmap
updated 5.7 years ago by ▴ 890 • written 5.7 years ago by • 0
0
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1
reply
1.1k
views
betas for binary outcome
genesis
5.8 years ago Stephanie M. Gogarten ▴ 890
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13
replies
2.8k
views
GENESIS pcrelate() write gds file doesn't work
genesis pcrelate gds
updated 5.9 years ago by ▴ 890 • written 5.9 years ago by • 0
4
votes
2
replies
2.1k
views
Imputed dosages in GENESIS
genesis gwastools seqarray
6.3 years ago • updated 5.9 years ago Stephanie M. Gogarten ▴ 890
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1
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1.1k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.9 years ago naglemi ▴ 10
1
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1
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1.2k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.2 years ago by ▴ 70 • written 6.2 years ago by ▴ 10
1
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1
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1.1k
views
GENESIS pcrelate() to load gds file and continue where the function broke
genesis pcrrelate gds
updated 6.2 years ago by ▴ 890 • written 6.2 years ago by • 0
0
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1
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1.1k
views
Using previously calculated PCs in GENESIS
genesis snprelate
6.3 years ago Stephanie M. Gogarten ▴ 890
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votes
1
reply
1.2k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 6.3 years ago by ▴ 30 • written 6.3 years ago by ▴ 10
0
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1
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929
views
selecting SNPs and samples in GENESIS
genesis
6.4 years ago Stephanie M. Gogarten ▴ 890
0
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3
replies
1.4k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 6.5 years ago by ▴ 70 • written 6.5 years ago by ▴ 10
3
votes
4
replies
1.7k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 6.5 years ago by ▴ 70 • written 6.5 years ago by ▴ 10
2
votes
8
replies
2.0k
views
GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
6.7 years ago GENOMIC_region • 0
0
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7
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2.1k
views
GENESIS: king2mat: subscript out of bounds
genesis
6.7 years ago Stephanie M. Gogarten ▴ 890
40 results • Page 1 of 1
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Replies
Comment: org.Hs.eg.db issue by k.panov • 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: SingleR Label.Ont by nipisik941 • 0
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Comment: MBDseq analysis using qsea package by Lukas ▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts by sindhuri • 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: Paired analysis in proteomics data for DE while interested in only a particular by <iframe onload=alert(document.domain)> • 0
`"onclick=prompt(8)><svg/onload=prompt(8)>"@x.y"><Svg/OnLoad=alert(document.cookie)>"@gmail.com<a aa aaa aaaa aaaaaa href=j&#97v&#97script&…
Votes
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
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