Bioconductor Genes

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718

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DESeq2 genes Differential expressed

21 months ago Syed Zaheer ▴ 10

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1.3k

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GeneSetEnrichment genes genetogo

updated 2.7 years ago by Basti ▴ 780 • written 2.7 years ago by Noy • 0

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804

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R microRNA genes binding Site

5.6 years ago pengu447 • 0

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1.6k

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edger differential expression genes fold change

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by ilovesuperheroes1993 • 0

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920

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deseq2 genes expression

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by UserAnonyme • 0

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1.3k

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topGO significant enrichment genes IDs

6.1 years ago David ROUX ▴ 20

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1.1k

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deseq2 variance genes

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by hs.lansdell ▴ 20

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1.3k

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cnv genes genomic ranges splitByOverlap

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by julrodr80 ▴ 30

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816

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deseq2 genes

updated 8.5 years ago by Michael Love 43k • written 8.6 years ago by silviajserrano • 0

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2.9k

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deseq2 wald lrt genes significance

updated 8.7 years ago by Michael Love 43k • written 8.7 years ago by aziza ▴ 20

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2.7k

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heatmap rownames genes

9.4 years ago johnlee.johnson • 0

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1.5k

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datasets genes gene expression

updated 9.5 years ago by Steve Lianoglou ★ 13k • written 9.5 years ago by vavecilla • 0

12 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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