Bioconductor Genes

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661

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DESeq2 genes Differential expressed

18 months ago Syed Zaheer ▴ 10

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1.2k

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GeneSetEnrichment genes genetogo

updated 2.4 years ago by Basti ▴ 780 • written 2.4 years ago by Noy • 0

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765

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R microRNA genes binding Site

5.4 years ago pengu447 • 0

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1.5k

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edger differential expression genes fold change

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by ilovesuperheroes1993 • 0

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863

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deseq2 genes expression

updated 5.6 years ago by Michael Love 42k • written 5.6 years ago by UserAnonyme • 0

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1.3k

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topGO significant enrichment genes IDs

5.8 years ago David ROUX ▴ 20

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1.1k

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deseq2 variance genes

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by hs.lansdell ▴ 20

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1.2k

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cnv genes genomic ranges splitByOverlap

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by julrodr80 ▴ 30

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787

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deseq2 genes

updated 8.3 years ago by Michael Love 42k • written 8.3 years ago by silviajserrano • 0

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2.8k

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deseq2 wald lrt genes significance

updated 8.4 years ago by Michael Love 42k • written 8.4 years ago by aziza ▴ 20

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2.6k

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heatmap rownames genes

9.2 years ago johnlee.johnson • 0

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1.4k

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datasets genes gene expression

updated 9.2 years ago by Steve Lianoglou ★ 13k • written 9.2 years ago by vavecilla • 0

12 results • Page 1 of 1

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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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