Bioconductor Genes

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739

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DESeq2 genes Differential expressed

23 months ago Syed Zaheer ▴ 10

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1.4k

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GeneSetEnrichment genes genetogo

updated 2.9 years ago by Basti ▴ 780 • written 2.9 years ago by Noy • 0

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825

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R microRNA genes binding Site

5.8 years ago pengu447 • 0

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1.7k

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edger differential expression genes fold change

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by ilovesuperheroes1993 • 0

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961

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deseq2 genes expression

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by UserAnonyme • 0

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1.4k

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topGO significant enrichment genes IDs

6.2 years ago David ROUX ▴ 20

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1.2k

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deseq2 variance genes

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by hs.lansdell ▴ 20

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1.3k

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cnv genes genomic ranges splitByOverlap

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by julrodr80 ▴ 30

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835

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deseq2 genes

updated 8.7 years ago by Michael Love 43k • written 8.7 years ago by silviajserrano • 0

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3.0k

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deseq2 wald lrt genes significance

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by aziza ▴ 20

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2.8k

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heatmap rownames genes

9.6 years ago johnlee.johnson • 0

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1.6k

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datasets genes gene expression

updated 9.6 years ago by Steve Lianoglou ★ 13k • written 9.6 years ago by vavecilla • 0

12 results • Page 1 of 1

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Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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Popular Question to sergisayolspuig ▴ 80

Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k