Bioconductor Geneontology

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918

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 13 months ago by Michael Love 43k • written 13 months ago by Filipe • 0

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2.8k

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rnaseq rnaseqGene geneontology

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by acram • 0

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1.2k

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microRNA gene RNASeqRData edgeR geneontology

2.4 years ago faiza • 0

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744

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GO GeneOntology LocusIDtogeneIDconversion

2.5 years ago BioinFo.X • 0

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2.8k

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Annotation GeneOntology topGO GO

updated 2.8 years ago by James W. MacDonald 68k • written 2.8 years ago by Raito92 ▴ 60

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1.1k

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GOstats Go.db GeneOntology

4.1 years ago MOHAMMAD • 0

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1.1k

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GO.db Annotation Clusterprofile GeneOntology

updated 4.1 years ago by Basti ▴ 780 • written 4.1 years ago by MOHAMMAD • 0

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1.9k

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topGO enrichmentanalysis geneontology

updated 4.2 years ago by Lluís Revilla Sancho ▴ 760 • written 4.2 years ago by Aini • 0

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8.6k

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clusterprofiler geneontology

updated 7.4 years ago by thokall ▴ 160 • written 7.4 years ago by giuseppe0525 • 0

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1.2k

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geneontology R go semantic similarity

updated 8.3 years ago by Valerie Obenchain ★ 6.8k • written 8.3 years ago by manasa22.reddy • 0

10 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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