Showing : geneontology • reset
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clusterProfiler, AnnotationHub, and discrepancies in GO Terms
Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology
updated 14 months ago by 43k • written 14 months ago by • 0
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Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
2.5 years ago faiza • 0
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Gene Ontology on Streptococcus Pneumoniae genes sets
GO GeneOntology LocusIDtogeneIDconversion
2.6 years ago BioinFo.X • 0
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Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 2.8 years ago by 68k • written 2.8 years ago by ▴ 60
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Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
4.1 years ago MOHAMMAD • 0
2
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Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 4.1 years ago by ▴ 780 • written 4.1 years ago by • 0
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topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 4.2 years ago by ▴ 760 • written 4.2 years ago by • 0
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question on GO analysis using clusterProfiler
clusterprofiler geneontology
updated 7.5 years ago by ▴ 160 • written 7.5 years ago by • 0
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GOSemSim bioconductor package
geneontology R go semantic similarity
updated 8.3 years ago by ★ 6.8k • written 8.3 years ago by • 0
10 results • Page 1 of 1
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Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
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remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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