Showing : genefilter • reset
1
vote
3
replies
911
views
DESeq: relaxing gene filtering thresholds increases mean-Sd correlation, but recovers many important genes
metaanalysis meanSd genefilter DESeq2
20 months ago Ndimensional ▴ 20
1
vote
3
replies
3.8k
views
DESeq2/genefilter compatibility with R 4.2.2
DESeq2 genefilter
2.3 years ago Morgane ▴ 10
1
vote
1
reply
906
views
Weight Array Quality before of after applying variance filtering?
limma arrays genefilter
updated 2.6 years ago by 68k • written 2.6 years ago by ▴ 40
0
votes
0
replies
1.0k
views
Cannot Install genefilter
genefilter
2.7 years ago Francis • 0
10
votes
23
replies
14k
views
Macbook M1 install genefilter failed
DESeq2 m1 macbook genefilter
3.6 years ago • updated 2.3 years ago soda ▴ 80
0
votes
1
reply
966
views
collided row names in heatmap.2
heatmap.2 genefilter deseq2
updated 3.6 years ago by 68k • written 3.6 years ago by • 0
0
votes
2
replies
1.5k
views
genefilter not available for R v4.1/arm64
DESeq2 genefilter
3.6 years ago jeremymsimon ▴ 20
0
votes
1
reply
954
views
Error using simpleaffy
software error simpleaffy genefilter
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
9
votes
10
replies
2.6k
views
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
limma microarray genefilter deseq2
5.7 years ago Jurat Shahidin ▴ 80
0
votes
6
replies
2.4k
views
Save ExpressionSet to csv file with columns and rows headers
microarray genefilter
updated 5.8 years ago by 68k • written 5.8 years ago by ▴ 10
0
votes
1
reply
1.6k
views
genefilter Package not available for R 3.5.2
genefilter
6.2 years ago radhikasundar520 • 0
0
votes
1
reply
2.4k
views
Can not install packages
ballgown genefilter RskittleBrewer
updated 6.3 years ago by ★ 6.6k • written 6.3 years ago by • 0
0
votes
5
replies
2.2k
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor brainarray genefilter oligo
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
0
votes
1
reply
1.7k
views
Unable to compile genefilter package
bioconductor genefilter compile
updated 7.0 years ago by 68k • written 7.0 years ago by • 0
0
votes
3
replies
2.1k
views
error in filtering genes with rowVars(gexpr(bg_chrX)) >1
genefilter ballgown
updated 7.1 years ago by • 0 • written 7.6 years ago by • 0
0
votes
1
reply
2.1k
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, ?
deseq2 filter genefilter
updated 7.3 years ago by 43k • written 7.3 years ago by • 0
1
vote
4
replies
2.3k
views
cran check shows that genefilter is not available
genefilter
7.3 years ago jinkaixiu ▴ 10
1
vote
3
replies
1.9k
views
Selecting genes that best separate between two groups
limma genefilter ttest clustering TPM
7.5 years ago lirongrossmann ▴ 80
1
vote
5
replies
1.3k
views
error when trying to apply the specific gene filter.
genefilter
7.6 years ago DataFanatic ▴ 10
6
votes
5
replies
15k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 10
1
vote
4
replies
1.6k
views
Error in the package of "genefilter" "nsFilter"
genefilter
updated 8.4 years ago by 68k • written 8.4 years ago by ▴ 20
3
votes
5
replies
2.7k
views
Fail to install "AnnotationHub"
software error annotation genefilter pd.hta.2.0
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 20
4
votes
1
reply
1.3k
views
Is it valid to use only genes of interest before eBayes step in limma?
limma genefilter
updated 8.7 years ago by ★ 28k • written 8.7 years ago by • 0
6
votes
6
replies
2.2k
views
genefilter filtered out 60% of the original genes?
genefilter edgeR
updated 8.8 years ago by ▴ 180 • written 8.8 years ago by ▴ 20
1
vote
1
reply
1.7k
views
Error using nsFilter() Error in (function (classes, fdef, mtable) unable to find an inherited method for function columns for signature function
genefilter
8.8 years ago Lucy • 0
2
votes
1
reply
1.8k
views
Filtering array data with nsFilter
genefilter nsFilter
updated 8.9 years ago by 52k • written 8.9 years ago by • 0
0
votes
1
reply
1.1k
views
Really weird results when I filter this new data that I have, script has worked on two previous data sets.
microarray limma genefilter
updated 9.0 years ago by 68k • written 9.0 years ago by • 0
0
votes
1
reply
1.4k
views
nsFilter not filtering out all of the normgene->exon.
genefilter affymetrix microarrays
updated 9.0 years ago by 68k • written 9.0 years ago by • 0
2
votes
2
replies
1.5k
views
I'm looking for a filtering method that it does't use genewise variances
genefilter liimma microarray
updated 9.2 years ago by ★ 13k • written 9.2 years ago by ▴ 20
4
votes
4
replies
2.5k
views
Suggestions for non-specific filtering criteria with limma
limma genefilter
updated 9.2 years ago by ★ 13k • written 9.2 years ago by ▴ 10
4
votes
4
replies
3.1k
views
DEXSeq and Independent filtering
dexseq deseq2 genefilter
updated 9.3 years ago by ★ 13k • written 9.3 years ago by ▴ 20
2
votes
12
replies
3.0k
views
I want to order genes in GO groups
gene ontology genefilter
updated 9.4 years ago by ▴ 370 • written 9.5 years ago by ▴ 10
0
votes
2
replies
3.2k
views
Error with oligo: environmentIsLocked
oligo bioconductor genefilter
updated 9.5 years ago by 68k • written 9.5 years ago by ▴ 10
0
votes
1
reply
1.7k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 9.8 years ago by • 0 • written 18.2 years ago by ▴ 170
2
votes
7
replies
1.9k
views
why genefilter does not work for me ?
R microarray genefilter
10.1 years ago Nemo ▴ 80
4
votes
4
replies
2.9k
views
Non-specific filtering methodogies for ExpressionSet in R/Bioconductor
genefilter R bioconductor differential gene expression
updated 10.1 years ago by 52k • written 10.2 years ago by ▴ 840
7
votes
5
replies
2.4k
views
Adjusted P values
limma genefilter
updated 10.3 years ago by 52k • written 10.3 years ago by ▴ 10
2
votes
4
replies
1.9k
views
filter.log in nsFilter function (package genefilter) gives null value
genefilter
updated 10.4 years ago by 68k • written 10.4 years ago by ▴ 10
1
vote
3
replies
9.5k
views
genefilter installation error
genefilter genefilter
updated 10.5 years ago by ▴ 150 • written 10.5 years ago by ▴ 10
0
votes
1
reply
1.3k
views
selection of probes, probesets mapping to the same gene
genefilter genefilter
updated 10.6 years ago by ★ 13k • written 10.6 years ago by ▴ 680
0
votes
2
replies
1.6k
views
Fwd: adjusted P-values
Cancer genefilter Cancer genefilter
updated 10.8 years ago by ★ 4.2k • written 10.8 years ago by ▴ 190
0
votes
0
replies
1.1k
views
adjusted P-values
genefilter genefilter
10.8 years ago Guest User ★ 13k
0
votes
1
reply
4.2k
views
error in installing \"genefilter\"
genefilter genefilter
updated 10.8 years ago by 68k • written 10.8 years ago by ★ 13k
1
vote
1
reply
2.2k
views
Rosetta Resolver-like error-weighted ANOVAs in Bioconductor
Microarray genefilter affy Microarray genefilter affy
updated 11.0 years ago by ★ 7.9k • written 11.0 years ago by ▴ 10
0
votes
4
replies
2.2k
views
genefilter kOverA filter by range
genefilter genefilter
updated 11.1 years ago by 68k • written 11.1 years ago by ▴ 220
0
votes
1
reply
1.2k
views
Fwd: [devteam-bioc] information about genefilter package
Microarray genefilter limma Microarray genefilter limma
updated 11.3 years ago by 68k • written 11.3 years ago by 16k
0
votes
3
replies
2.2k
views
Problem installing genefilter (Ubuntu 12.04; Bioconductor v2.12)
genefilter genefilter
updated 11.6 years ago by 68k • written 11.6 years ago by ★ 13k
0
votes
9
replies
1.8k
views
Error in calculating P-values with Genefilter function
genefilter genefilter
updated 11.8 years ago by 68k • written 11.8 years ago by ★ 13k
0
votes
2
replies
2.7k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 11.9 years ago by 25k • written 11.9 years ago by ▴ 30
0
votes
0
replies
1.1k
views
analysis of HuGene2.0-st array affymetrix -aroma package
genefilter genefilter
11.9 years ago Andreia Fonseca ▴ 810
50 results • Page 1 of 1
Recent ...
Replies
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
Awards • All
Popular Question to svlachavas ▴ 840
Popular Question to Matthew McCormack ▴ 180
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.1k
Popular Question to Marco • 0
Locations • All
United States, 1 minute ago
UPF, Barcelona, Spain, 48 minutes ago
India, 54 minutes ago
United States, 56 minutes ago
Czechia, 1 hour ago
Traffic: 1498 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6