Showing : gene annotation • reset
1
vote
2
replies
740
views
adding gene names with biomaRt hgnc_symbol column <logical> with NA
biomaRt gene annotation
updated 4.8 years ago by 67k • written 4.8 years ago by ▴ 10
0
votes
2
replies
1.3k
views
questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
R ensemblVEP gene annotation Variant Effect Predictor Ensembl VEP
5.4 years ago ycchang • 0
3
votes
3
replies
1.6k
views
Recount data for unannotated genes
recount RNAseq gencode lncRNA gene annotation
updated 5.7 years ago by ▴ 70 • written 5.7 years ago by ▴ 20
3
votes
3
replies
4.0k
views
Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dataset
edger DGEList org.hs.eg.db gene annotation
updated 3.2 years ago by • 0 • written 7.1 years ago by ▴ 840
0
votes
0
replies
1.5k
views
Create list of genes within each GOslim term
gene ontology goslim enrichment analysis gene annotation
8.7 years ago mirko • 0
5 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
Locations • All
WEHI, Melbourne, Australia, 1 hour ago
The city by the bay, 4 hours ago
United Kingdom, 5 hours ago
United States, 6 hours ago
UPF, Barcelona, Spain, 8 hours ago
Traffic: 466 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6