Bioconductor Gencode

Showing : gencode • reset

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1.6k

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recount RNAseq gencode lncRNA gene annotation

updated 5.6 years ago by chris.wilks ▴ 70 • written 5.6 years ago by francesco.gandolfi ▴ 20

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6.7k

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biomart rsubread gencode

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by YinCY ▴ 20

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2.1k

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bsgenome variant calling whole exome sequence gencode reference genome

updated 6.2 years ago by Hervé Pagès 16k • written 6.2 years ago by svlachavas ▴ 830

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1.8k

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deseq2 tximport org.mm.eg.db gencode

6.6 years ago pvd2107 ▴ 30

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3.6k

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AnnotationHub Gencode GFF3 FASTA News

9.2 years ago Sonali Arora ▴ 390

5 results • Page 1 of 1

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Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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