Showing : fgsea • reset
8
votes
5
replies
3.5k
views
How to get t-statistic values using edgeR?
r edger t-statistic fgsea gsea
updated 5.0 years ago by 50k • written 5.0 years ago by ▴ 110
0
votes
8
replies
2.8k
views
Does fgsea order the stats argument?
fgsea
6.9 years ago rubi ▴ 110
4
votes
5
replies
310
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
11 days ago • updated 1 day ago Chris ▴ 10
3
votes
3
replies
4.2k
views
Warning with the example of GSEA
fgsea fgse
3.1 years ago • updated 3.0 years ago julie.hardy • 0
2
votes
3
replies
3.0k
views
fgsea not downloading due to new r version. Is there a way around this?
r fgsea
2.3 years ago amir.khan • 0
0
votes
1
reply
1.1k
views
do expression of leading edges within a negative NES term reflect the same direction as it's enrichment score? aka downregulation of leading edges
fgsea
updated 3.9 years ago by ▴ 260 • written 3.9 years ago by ▴ 30
0
votes
3
replies
2.2k
views
why does stat column disappears after lfcshrink on deseq 2 and why does fgsea uses stat column (not affected by shrinking) for fgsea?
fgsea DESeq2
updated 3.2 years ago by ★ 4.1k • written 3.2 years ago by ▴ 30
0
votes
2
replies
1.7k
views
Error: Aesthetics must be either length 1 or the same as the data (1): x and xend
fgsea
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by ▴ 20
2
votes
2
replies
2.3k
views
fgsea usage question - what gene set to use?
fgsea
3.2 years ago alexandr.gopanenko ▴ 50
4
votes
2
replies
617
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea edgeR
14 days ago • updated 10 days ago gene_bioconductor ▴ 10
2
votes
1
reply
1.5k
views
Direction aware fgsea test
fgsea gsea
updated 7.3 years ago by ▴ 260 • written 7.3 years ago by ▴ 110
6
votes
15
replies
2.9k
views
Change in pathway IDs scheme in reactome.db
reactome.db fgsea
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by ▴ 260
1
vote
5
replies
2.1k
views
FGSEA only runs with <1000 permutations
fgsea gsea
updated 6.8 years ago by ▴ 260 • written 6.8 years ago by • 0
3
votes
2
replies
1.4k
views
Calculate S/N ratios from apeglm for GSEA
apeglm fgsea Signal-To-Noise Ratio
updated 5.0 years ago by 42k • written 5.0 years ago by ▴ 20
1
vote
2
replies
1.5k
views
what does gseaparam argument in fgsea() means?
fgsea
updated 3.9 years ago by ▴ 260 • written 3.9 years ago by ▴ 30
7
votes
6
replies
2.2k
views
Implementation of the "original" GSEA algorithm in R
clusterProfiler GSEA fgsea
updated 16 months ago by 50k • written 17 months ago by ▴ 30
0
votes
4
replies
1.1k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt GO ensembldb fgsea
19 months ago dario.beraldi • 0
0
votes
2
replies
367
views
The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea gsea
7 weeks ago • updated 6 weeks ago Gordon • 0
0
votes
4
replies
215
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
28 days ago sropri • 0
2
votes
2
replies
221
views
fgsea significant result
fgsea
12 days ago • updated 11 days ago Chris ▴ 10
2
votes
3
replies
1.8k
views
Compute fgsea with my own database with R version 4.0.2
R fgsea
updated 3.0 years ago by ▴ 260 • written 3.0 years ago by • 0
0
votes
5
replies
522
views
Help with DESeq results to pathways with the fgsea package
fgsea rna
updated 3 months ago by 65k • written 3 months ago by • 0
3
votes
2
replies
399
views
cant' download fgsea_1.20.0.tar.gz
download fgsea
9 months ago luca.s ▴ 50
2
votes
2
replies
230
views
Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
fgsea
17 days ago Chris ▴ 10
0
votes
1
reply
2.4k
views
Tied Ranks in fgsea
fgsea
updated 3.0 years ago by ★ 4.0k • written 3.0 years ago by • 0
0
votes
0
replies
132
views
Empty table plot using plotGseaTable()
fgsea
15 days ago • updated 13 days ago Chris ▴ 10
0
votes
0
replies
378
views
is it possible to limit fgsea to particular tissue type?
fgsea
18 months ago kavator ▴ 30
0
votes
0
replies
637
views
using fgsea to compare two datasets
GSEA fgsea
10 months ago Cen • 0
0
votes
3
replies
2.9k
views
fgsea p-values are mostly the same upon analysis
fgsea gsea sc-rnaseq
5.8 years ago atakanekiz ▴ 30
1
vote
5
replies
363
views
fgsea fork
fgsea
updated 6 weeks ago by 65k • written 6 weeks ago by • 0
1
vote
2
replies
1.8k
views
ReactomePA / Reactome: GSEA error message
reactomepa reactome gsea fgsea
5.9 years ago martin.busch • 0
0
votes
0
replies
863
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff clusterProfiler fgsea
11 months ago pg45863 ▴ 10
0
votes
7
replies
1.9k
views
Problem with fgsea
fgsea
updated 2.1 years ago by ▴ 260 • written 2.1 years ago by • 0
33 results • Page 1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Awards • All
Popular Question to Chris ▴ 10
Popular Question to Guido Hooiveld ★ 4.0k
Scholar to Michael Love 42k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to boczniak767 ▴ 720
Locations • All
United States, just now
Melbourne, Australia, 14 minutes ago
United States, 1 hour ago
The Netherlands, 2 hours ago
India, 2 hours ago
Traffic: 400 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6