Showing : fgsea • reset
2
votes
2
replies
708
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase fgsea msigdb GeneSetEnrichment
3 months ago Assa Yeroslaviz ★ 1.5k
4
votes
4
replies
909
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NAs in fgseaMultilevel
fgsea
updated 4 months ago by ▴ 280 • written 4 months ago by • 0
1
vote
13
replies
1.2k
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Ranking the GSEA Results
fgsea log2FC
5 months ago V_Vibes • 0
0
votes
0
replies
305
views
Filtering the genesets for fgseaMultiLevel
msigdb fgsea msig
6 months ago Tanvi • 0
4
votes
5
replies
1.1k
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
7 months ago Chris ▴ 20
2
votes
2
replies
930
views
fgsea significant result
fgsea
7 months ago Chris ▴ 20
4
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2
replies
1.1k
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea edgeR
7 months ago gene_bioconductor ▴ 10
0
votes
0
replies
316
views
Empty table plot using plotGseaTable()
fgsea
7 months ago Chris ▴ 20
2
votes
2
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789
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Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
fgsea
7 months ago Chris ▴ 20
0
votes
8
replies
1.4k
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
updated 6 months ago by ▴ 280 • written 8 months ago by • 0
1
vote
5
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755
views
fgsea fork
fgsea
updated 8 months ago by 67k • written 8 months ago by • 0
0
votes
2
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1.0k
views
The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea gsea
9 months ago • updated 8 months ago Gordon • 0
0
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5
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1.1k
views
Help with DESeq results to pathways with the fgsea package
fgsea rna
updated 10 months ago by 67k • written 10 months ago by • 0
3
votes
2
replies
601
views
cant' download fgsea_1.20.0.tar.gz
download fgsea
16 months ago luca.s ▴ 50
0
votes
0
replies
916
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using fgsea to compare two datasets
GSEA fgsea
17 months ago Cen • 0
0
votes
0
replies
1.5k
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff clusterProfiler fgsea
19 months ago pg45863 ▴ 10
7
votes
6
replies
3.1k
views
Implementation of the "original" GSEA algorithm in R
clusterProfiler GSEA fgsea
updated 24 months ago by 52k • written 2.0 years ago by ▴ 70
0
votes
0
replies
547
views
is it possible to limit fgsea to particular tissue type?
fgsea
2.1 years ago kavator ▴ 30
0
votes
4
replies
1.4k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt GO ensembldb fgsea
2.2 years ago dario.beraldi • 0
0
votes
8
replies
2.6k
views
Problem with fgsea
fgsea
updated 6 months ago by 67k • written 2.7 years ago by • 0
2
votes
3
replies
4.0k
views
fgsea not downloading due to new r version. Is there a way around this?
r fgsea
2.9 years ago amir.khan • 0
0
votes
1
reply
3.0k
views
Tied Ranks in fgsea
fgsea
updated 3.6 years ago by ★ 4.1k • written 3.6 years ago by • 0
2
votes
3
replies
2.3k
views
Compute fgsea with my own database with R version 4.0.2
R fgsea
updated 3.6 years ago by ▴ 280 • written 3.6 years ago by • 0
3
votes
3
replies
5.3k
views
Warning with the example of GSEA
fgsea fgse
3.7 years ago • updated 3.6 years ago julie.hardy • 0
2
votes
2
replies
3.0k
views
fgsea usage question - what gene set to use?
fgsea
3.8 years ago alexandr.gopanenko ▴ 50
0
votes
2
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2.0k
views
Error: Aesthetics must be either length 1 or the same as the data (1): x and xend
fgsea
updated 3.8 years ago by ★ 4.0k • written 3.8 years ago by ▴ 20
0
votes
3
replies
2.7k
views
why does stat column disappears after lfcshrink on deseq 2 and why does fgsea uses stat column (not affected by shrinking) for fgsea?
fgsea DESeq2
updated 3.8 years ago by ★ 4.6k • written 3.8 years ago by ▴ 30
0
votes
1
reply
1.3k
views
do expression of leading edges within a negative NES term reflect the same direction as it's enrichment score? aka downregulation of leading edges
fgsea
updated 4.5 years ago by ▴ 280 • written 4.5 years ago by ▴ 30
1
vote
2
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1.8k
views
what does gseaparam argument in fgsea() means?
fgsea
updated 4.5 years ago by ▴ 280 • written 4.5 years ago by ▴ 30
3
votes
2
replies
1.8k
views
Calculate S/N ratios from apeglm for GSEA
apeglm fgsea Signal-To-Noise Ratio
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 20
8
votes
5
replies
4.3k
views
How to get t-statistic values using edgeR?
r edger t-statistic fgsea gsea
updated 5.6 years ago by 52k • written 5.6 years ago by ▴ 120
0
votes
3
replies
3.6k
views
fgsea p-values are mostly the same upon analysis
fgsea gsea sc-rnaseq
6.4 years ago atakanekiz ▴ 30
1
vote
2
replies
2.0k
views
ReactomePA / Reactome: GSEA error message
reactomepa reactome gsea fgsea
6.5 years ago martin.busch • 0
1
vote
5
replies
2.5k
views
FGSEA only runs with <1000 permutations
fgsea gsea
updated 7.4 years ago by ▴ 280 • written 7.4 years ago by • 0
0
votes
8
replies
3.3k
views
Does fgsea order the stats argument?
fgsea
7.5 years ago rubi ▴ 110
6
votes
15
replies
3.5k
views
Change in pathway IDs scheme in reactome.db
reactome.db fgsea
updated 7.7 years ago by ▴ 150 • written 7.7 years ago by ▴ 280
2
votes
1
reply
1.8k
views
Direction aware fgsea test
fgsea gsea
updated 7.9 years ago by ▴ 280 • written 7.9 years ago by ▴ 110
37 results • Page 1 of 1
Recent ...
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Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
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Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
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