Bioconductor FetchExtendedChromInfoFromUCSC

Showing : fetchExtendedChromInfoFromUCSC • reset

8

votes

7

replies

4.0k

views

ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by gokcen.eraslan ▴ 10

1 result • Page 1 of 1

Recent ...

Replies

Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by Blair • 0

@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…

Comment: error in ChAMP loading file by 81becky • 0

hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…

Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Votes

A: Effect of lfcThreshold on p-value in DESeq2

Awards • All

Popular Question to Vincent J. Carey, Jr. 6.7k

Teacher to Gordon Smyth 52k

Scholar to James W. MacDonald 68k