Bioconductor Featurecount

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584

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featureCount Rsubread HPC

18 months ago kthapa • 0

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1.8k

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DESeq2 FeatureCount

updated 2.6 years ago by ATpoint ★ 4.8k • written 2.6 years ago by Jiayi • 0

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930

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ExomeSeq featureCount

3.4 years ago adR ▴ 40

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2.2k

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featurecount rsubread GenomicAlignments

5.1 years ago Konstantinos Yeles ▴ 80

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3.4k

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dexseq rsubread featureCount software error

updated 5.4 years ago by Yang Liao ▴ 450 • written 5.4 years ago by seung.ho.steven.choi • 0

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2.4k

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featureCount rna-seq gene_id re_gene_id stringtie

updated 6.2 years ago by Wei Shi ★ 3.6k • written 6.2 years ago by IRAIA.MAIALEN • 0

6 results • Page 1 of 1

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Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k

If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…

Comment: PhD scholar by ATpoint ★ 4.8k

Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…

Answer: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

Yes, that is the correct way to use `arrayWeightsQuick`. Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…

Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Votes

Having Trouble Using CNE12() and CNE21() in CNEr

Answer: Having Trouble Using CNE12() and CNE21() in CNEr

annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

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Popular Question to Ariel Chernomoretz ▴ 170