Bioconductor Fdrtool

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p-value FDR DEP

updated 3.5 years ago by António Miguel de Jesus Domingues ▴ 510 • written 4.0 years ago by Alexei Leliavski ▴ 60

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1.3k

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fdrtool

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by Paul • 0

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3.1k

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deseq2 fdrtool apeglm

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by Paul • 0

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1.2k

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deseq2 rnaseq sva fdrtool ihw

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by rihards.saksis • 0

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1.7k

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deseq2 mirna fdrtool

updated 5.8 years ago by Robert Castelo ★ 3.4k • written 5.8 years ago by L_K • 0

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deseq2 fdrtool

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by bioinfo • 0

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3.7k

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deseq2 rnaseq fdrtool

updated 6.2 years ago by Ryan C. Thompson ★ 7.9k • written 6.2 years ago by C T ▴ 140

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pvalue adjusted pvalue fdrtool

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by hele7 ▴ 20

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2.9k

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fdrtool deseq2

7.0 years ago rrcutler ▴ 70

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7.6k

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deseq2 rnaseq fdrtool dispersion

updated 7.1 years ago by Bernd Klaus ▴ 610 • written 7.1 years ago by rrcutler ▴ 70

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2.5k

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deseq2 fdrtool genomicalignments

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by jakob.petereit ▴ 20

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rnaseq deseq2 fdrtool differential gene expression

7.3 years ago tcalvo ▴ 100

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2.7k

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fdrtool p-value distribution

7.8 years ago j.bergenstrahle ▴ 90

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deseq2 FDR fdrtool

updated 7.8 years ago by Bernd Klaus ▴ 610 • written 7.8 years ago by deena ▴ 20

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1.8k

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deseq2 multiple factor design FDR fdrtool

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by marieke • 0

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3.9k

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deseq2 fdrtool

updated 8.5 years ago by Bernd Klaus ▴ 610 • written 8.5 years ago by dhibar ▴ 60

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2.4k

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deseq2 rnaseq contrast multiple comparisons fdrtool

8.6 years ago sebastiano.curreli • 0

17 results • Page 1 of 1

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Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10

Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…

Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k

I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Also, re DMR.plot(), yes the understanding is that all DMRs from EPICv2 should be plotted in hg38. I've left that implied for the user sinc…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Thanks for this. If your data is from 450K, you'll have to call your DMRs in hg19, and then lift the DMR ranges over to hg38 p…

Votes

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

Answer: Deseq2 Design

Answer: Fold change calculation in Diffbind vs. DESEQ2?

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k