Showing : fastq • reset
0
votes
1
reply
1.3k
views
Seqinr for FASTQ files?
fastq fast seqinr
updated 2.9 years ago by ★ 4.7k • written 2.9 years ago by • 0
7
votes
12
replies
5.7k
views
.fastq to .txt conversion for EdgeR package and merging two paired end sequence files
EdgeR normalization fastq txt TMM
updated 2.8 years ago by 52k • written 9.3 years ago by • 0
0
votes
3
replies
3.9k
views
How to count barcode sequences in a fastq file
fastq barcoding
updated 3.6 years ago by ★ 4.0k • written 3.6 years ago by ▴ 30
2
votes
3
replies
2.8k
views
error when reading fastq file
FastqCleaner fastq ShortRead
updated 4.0 years ago by 68k • written 4.0 years ago by • 0
3
votes
9
replies
10k
views
merge fastq.gz in R? (or in Windows?)
rnaseq bioconductor fastq
updated 4.2 years ago by • 0 • written 9.7 years ago by • 0
0
votes
3
replies
1.6k
views
ShortRead Error message: invalid character '
shortread fastq
5.4 years ago lauren.fitch • 0
2
votes
3
replies
1.9k
views
Boxplot function not showing all reads length on x-axis
boxplot reads fastq sequencing rsubread
updated 5.8 years ago by ★ 3.6k • written 5.8 years ago by ▴ 60
7
votes
4
replies
4.0k
views
Convert BAM to FASTQ
BAM FASTQ
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 30
7
votes
7
replies
6.2k
views
What are the methods to get count data per cell from single cell fastq given only R1, R2, and I1 fastq files
fastq single cell
updated 6.0 years ago by 52k • written 6.0 years ago by ▴ 380
0
votes
2
replies
6.1k
views
Converting Fastq to Fasta in R
R Bioinformatics Fastq Fasta
updated 6.1 years ago by 68k • written 6.1 years ago by • 0
0
votes
0
replies
1.1k
views
Quantifying reporter expression to validate sequencing
alignment Fastq fasta
6.3 years ago A ▴ 40
0
votes
0
replies
1.2k
views
Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql fastq seqinr ngs sangerseqr
6.9 years ago JoeMG • 0
4
votes
3
replies
1.8k
views
The ShortRead package does not handle quality score '~' (Q=93) found in PacBio fastq files
shortread pacbio fastq
updated 7.1 years ago by 25k • written 7.1 years ago by ▴ 50
3
votes
10
replies
5.6k
views
How to check that the reads in two fastq files are in the same order
shortread fastq
updated 8.2 years ago by 68k • written 8.2 years ago by ▴ 20
0
votes
2
replies
1.5k
views
How to start CrispRVariants with fastq file starting point
R crispr fastq
8.3 years ago kfburbach • 0
2
votes
1
reply
1.6k
views
Uniting SRA Data into a single file
R fastq SRA sradb
updated 8.3 years ago by 25k • written 8.3 years ago by • 0
0
votes
2
replies
3.2k
views
subset from fastq file
fastq
8.5 years ago KB ▴ 50
0
votes
1
reply
2.3k
views
Error downloading using SRAdb
fastq sradb ftp
updated 9.0 years ago by ▴ 170 • written 9.0 years ago by • 0
1
vote
9
replies
3.5k
views
need help manipulating fastq file
fastq
updated 9.5 years ago by 25k • written 9.5 years ago by ▴ 50
0
votes
2
replies
3.4k
views
Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 9.8 years ago by 68k • written 9.8 years ago by • 0
2
votes
5
replies
2.1k
views
ShortRead trim sequence at specific position
shortread fastq
9.9 years ago danova_fr ▴ 20
5
votes
1
reply
3.5k
views
fastqSampler and writeFastq in shortread package
shortread fastq write
updated 10.1 years ago by 25k • written 10.1 years ago by ▴ 100
22 results • Page 1 of 1
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Comment: sesameDataCache is not work properly on my system by Samreen • 0
Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…
Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages? by wilkinson • 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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