Bioconductor Factor

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833

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factor DESeq2 MultipleComparison

updated 3.0 years ago by swbarnes2 ★ 1.4k • written 3.0 years ago by diegocastano182 • 0

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958

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Factor Levels Dispersionestimates DESeq2

3.0 years ago rafaelsolersanblas ▴ 50

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1.8k

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deseq2 levels factor colData

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by ariel ▴ 20

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1.8k

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genomicranges RaggedExperiment coercion logical factor

updated 7.0 years ago by Marcel Ramos 700 • written 7.0 years ago by Taran • 0

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3.9k

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deseq2 deseq factor rnaseq

updated 7.3 years ago by Peter Langfelder ★ 3.0k • written 7.3 years ago by sup230 ▴ 30

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2.0k

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genomicranges seqnames factor

8.0 years ago wcstcyx ▴ 30

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933

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R overrrepresentation factor variable factor enrichment

8.0 years ago IOM ▴ 20

7 results • Page 1 of 1

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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k