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Showing :
expression
•
reset
5
votes
8
replies
2.6k
views
Question on performing filtering by gene expression on a normalized matrix in limma?
expression
R
filtering
limma
2.5 years ago • updated 2.3 years ago
mohammedtoufiq91
▴ 10
0
votes
0
replies
670
views
Argument is of length zero in variancePartition/Dream
expression
variancePartition
edgeR
2.6 years ago
Jonathan
• 0
0
votes
1
reply
1.5k
views
Re-normalize microarray dataset in R
microarray
quantile
expression
R
Normalization
updated 3.7 years ago by
Konstantinos Yeles
▴ 80 • written 3.7 years ago by
mohammedtoufiq91
▴ 10
1
vote
1
reply
1.5k
views
Table expression data from GEO file
GEO
expression
GEOquery
updated 4.9 years ago by
Robert Castelo
★ 3.4k • written 4.9 years ago by
lsbew
• 0
1
vote
9
replies
2.6k
views
Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs
RNA-Seq
Isoforms
DTU
expression
updated 5.7 years ago by
fruce_ki
▴ 20 • written 5.7 years ago by
UserAnonyme
• 0
1
vote
2
replies
946
views
Two factors design with DESEq2
deseq2
genes
expression
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
UserAnonyme
• 0
7
votes
3
replies
4.2k
views
Log2(RPKM) counts in Bioconductor
rpkm
scater
calcaverage
R
expression
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
kushshah
▴ 10
0
votes
6
replies
1.7k
views
variancePartition - testing for individuals
variance
formula
expression
updated 6.2 years ago by
mikhael.manurung
▴ 280 • written 6.2 years ago by
rina
▴ 30
0
votes
0
replies
1.8k
views
Job:
Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job
sequencing
methylation
expression
Job
10.1 years ago
Andy Lynch
▴ 120
6
votes
5
replies
2.1k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 10.2 years ago by
Gordon Smyth
52k • written 10.2 years ago by
Paulo Nuin
▴ 200
10 results • Page
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Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Comment: Question on displaying color photo as Greyscale in EBImage
by
Albert
• 0
great and very nice
Comment: European Bioconductor Conference 2023 planning
by
Pandora
• 0
The [Tag Game][1] is not just a simple chase; it involves strategy and tactics as players must think quickly to avoid being tagged. Various…
Comment: Generalized edgeR functions
by
bukarimanches
• 0
I have estimated the new parameter set, it doesn't seem as useful as I thought [geometry dash lite][1] [1]: https://geometry-lite.com/
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
Morse
• 0
[Geometry Dash Lite][1] is the free version of the famous Geometry Dash series. It was made by RobTop Games and lets players enjoy the thri…
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
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Michael Love
43k
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Rob
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shepherl
4.1k
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Gordon Smyth
52k
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