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Showing :
expression
•
reset
5
votes
8
replies
2.0k
views
Question on performing filtering by gene expression on a normalized matrix in limma?
expression
R
filtering
limma
21 months ago • updated 19 months ago
mohammedtoufiq91
▴ 10
0
votes
0
replies
481
views
Argument is of length zero in variancePartition/Dream
expression
variancePartition
edgeR
22 months ago
Jonathan
• 0
0
votes
1
reply
1.2k
views
Re-normalize microarray dataset in R
microarray
quantile
expression
R
Normalization
updated 3.0 years ago by
Konstantinos Yeles
▴ 80 • written 3.0 years ago by
mohammedtoufiq91
▴ 10
1
vote
1
reply
1.1k
views
Table expression data from GEO file
GEO
expression
GEOquery
updated 4.2 years ago by
Robert Castelo
★ 3.3k • written 4.2 years ago by
lsbew
• 0
1
vote
9
replies
2.0k
views
Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs
RNA-Seq
Isoforms
DTU
expression
updated 5.0 years ago by
fruce_ki
▴ 20 • written 5.0 years ago by
UserAnonyme
• 0
1
vote
2
replies
757
views
Two factors design with DESEq2
deseq2
genes
expression
updated 5.2 years ago by
Michael Love
42k • written 5.2 years ago by
UserAnonyme
• 0
7
votes
3
replies
3.4k
views
Log2(RPKM) counts in Bioconductor
rpkm
scater
calcaverage
R
expression
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
kushshah
▴ 10
0
votes
6
replies
1.4k
views
variancePartition - testing for individuals
variance
formula
expression
updated 5.4 years ago by
mikhael.manurung
▴ 280 • written 5.4 years ago by
rina
▴ 30
0
votes
0
replies
1.6k
views
Job:
Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job
sequencing
methylation
expression
Job
9.4 years ago
Andy Lynch
▴ 120
6
votes
5
replies
1.9k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 9.5 years ago by
Gordon Smyth
51k • written 9.5 years ago by
Paulo Nuin
▴ 200
10 results • Page
1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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mohammedtoufiq91
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ATpoint
★ 4.2k
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WouterDeCoster
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