Bioconductor Expression

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2.5k

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expression R filtering limma

2.3 years ago • updated 2.1 years ago mohammedtoufiq91 ▴ 10

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619

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expression variancePartition edgeR

2.4 years ago Jonathan • 0

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1.4k

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microarray quantile expression R Normalization

updated 3.5 years ago by Konstantinos Yeles ▴ 80 • written 3.5 years ago by mohammedtoufiq91 ▴ 10

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1.4k

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GEO expression GEOquery

updated 4.7 years ago by Robert Castelo ★ 3.4k • written 4.7 years ago by lsbew • 0

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2.4k

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RATs RNA-Seq Isoforms DTU expression

updated 5.5 years ago by fruce_ki ▴ 20 • written 5.5 years ago by UserAnonyme • 0

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891

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deseq2 genes expression

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by UserAnonyme • 0

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3.9k

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rpkm scater calcaverage R expression

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by kushshah ▴ 10

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1.6k

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variance formula expression

updated 6.0 years ago by mikhael.manurung ▴ 280 • written 6.0 years ago by rina ▴ 30

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1.8k

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job sequencing methylation expression Job

9.9 years ago Andy Lynch ▴ 120

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2.1k

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 10.0 years ago by Gordon Smyth 52k • written 10.0 years ago by Paulo Nuin ▴ 200

10 results • Page 1 of 1

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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 740

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Comment: EdgeR Biological CVs by ATpoint ★ 4.6k

"Joseph" is a spam bot...

Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k

GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…

Votes

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

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