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experimentdata
•
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0
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11
replies
1.9k
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News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
14 months ago • updated 6 months ago
shepherl
4.1k
1
vote
8
replies
1.8k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 6.1 years ago by
shepherl
4.1k
1
vote
1
reply
1.1k
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 2.6 years ago by
ATpoint
★ 4.8k • written 2.6 years ago by
Mohamed
▴ 30
0
votes
5
replies
1.8k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
3.5 years ago • updated 3.0 years ago
shepherl
4.1k
2
votes
2
replies
1.8k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
4.4 years ago • updated 4.0 years ago
shepherl
4.1k
1
vote
2
replies
1.7k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
4.6 years ago • updated 4.5 years ago
shepherl
4.1k
0
votes
0
replies
1.2k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.2 years ago
shepherl
4.1k
0
votes
1
reply
1.1k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.3 years ago
shepherl
4.1k
0
votes
0
replies
1.1k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.4 years ago
shepherl
4.1k
0
votes
2
replies
2.2k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
5.6 years ago • updated 5.4 years ago
shepherl
4.1k
0
votes
0
replies
1.1k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
5.6 years ago
shepherl
4.1k
0
votes
1
reply
1.3k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
5.7 years ago • updated 5.6 years ago
shepherl
4.1k
0
votes
3
replies
1.4k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
5.9 years ago
shepherl
4.1k
0
votes
1
reply
1.1k
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
6.0 years ago • updated 5.9 years ago
shepherl
4.1k
0
votes
1
reply
1.5k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
6.2 years ago
shepherl
4.1k
0
votes
0
replies
1.3k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
7.0 years ago
shepherl
4.1k
0
votes
0
replies
1.3k
views
How to load additional data from fcs files
fcs
concentration
experimentdata
8.0 years ago
jurg.spaak
• 0
0
votes
1
reply
1.9k
views
Extract the gate in the data file (fcs file) from MoFlo Astrios
gate
cytometry
experimentdata
stategy
MoFlo Astrios
8.2 years ago
cr
• 0
1
vote
2
replies
1.4k
views
Submitting an experimental data package
submit package
experimentdata
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
mark.dunning
▴ 20
1
vote
3
replies
1.8k
views
How to update the data in an experimental data package
experimentdata
update
updated 10.6 years ago by
Laurent Gatto
1.6k • written 10.6 years ago by
paul.theodor.pyl
▴ 10
0
votes
2
replies
3.4k
views
Biobase - Error: ExpressionSet
Microarray
Annotation
GO
ExperimentData
Biobase
Microarray
Annotation
GO
ExperimentData
updated 11.5 years ago by
Laurent Gatto
1.6k • written 11.5 years ago by
Lisa Cohen
▴ 50
0
votes
4
replies
10k
views
Error while building ExpressionSet from scratch....
ExperimentData
LMGene
ExperimentData
LMGene
updated 13.5 years ago by
Martin Morgan
25k • written 13.5 years ago by
Bas Jansen
▴ 150
0
votes
1
reply
1.6k
views
justRMA {affy} error
Annotation
ExperimentData
cdf
Annotation
ExperimentData
cdf
updated 13.7 years ago by
Martin Morgan
25k • written 13.7 years ago by
Julio Alejandro Di Rienzo
▴ 10
0
votes
2
replies
2.3k
views
RMA implemented in oligo package vs affy package
ExperimentData
cdf
affy
PROcess
oligo
ExperimentData
cdf
affy
PROcess
oligo
16.1 years ago
heyi xiao
▴ 360
0
votes
0
replies
1.6k
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
beadarray
Annotation
ExperimentData
beadarray
16.1 years ago
Anne-Kristin Stavrum
▴ 10
0
votes
0
replies
1.5k
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
Cancer
Biobase
beadarray
Annotation
ExperimentData
Cancer
16.1 years ago
Martin Morgan
25k
0
votes
3
replies
2.0k
views
ExpressionSet or MAList
Annotation
ExperimentData
Cancer
Annotation
ExperimentData
Cancer
updated 17.0 years ago by
Gordon Smyth
52k • written 17.0 years ago by
Daniel Brewer
★ 1.9k
0
votes
2
replies
1.9k
views
ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :
Annotation
ExperimentData
cdf
affy
Annotation
ExperimentData
cdf
affy
updated 17.1 years ago by
James W. MacDonald
68k • written 17.1 years ago by
Langdon W B
▴ 20
0
votes
3
replies
2.5k
views
ReadAffy Error
Annotation
ExperimentData
cdf
affy
affyio
Annotation
ExperimentData
cdf
affy
affyio
updated 17.7 years ago by
Sylvia.Merk@ukmuenster.de
▴ 60 • written 17.7 years ago by
Markus Schmidberger
▴ 380
0
votes
6
replies
3.8k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
updated 17.7 years ago by
Weiyin Zhou
▴ 220 • written 17.7 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
2.1k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
17.7 years ago
Min Wook Kim
▴ 20
31 results • Page
1 of 1
Recent ...
Replies
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
donnycrimson
• 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Comment: CluserProfiler message "No gene can be mapped"
by
Carolina
• 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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