Showing : experimental design • reset
6
votes
6
replies
5.4k
views
Limma multi-group analysis - General F-test
limma experimental design
updated 4.8 years ago by 52k • written 4.8 years ago by ▴ 10
0
votes
1
reply
876
views
DESeq2 compairson of 3 samples from 1 type
deseq2 multiple factor design contrasts experimental design
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
1
vote
2
replies
1.0k
views
Call DE genes on Unbalanced design with controls
edger experimental design
5.9 years ago timedreamer ▴ 10
0
votes
4
replies
1.2k
views
DESeq2 analysis design - different individuals for all samples
deseq2 rnaseq model.matrix experimental design
6.4 years ago Maithê Barros ▴ 10
1
vote
9
replies
2.0k
views
shRNA-Seq analysis using edgeR
shrnaseq edger experimental design model.matrix
updated 6.4 years ago by ★ 28k • written 6.4 years ago by ★ 1.5k
0
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0
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1.1k
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Job: Postdoctoral Research Fellowship- reinforcement learning in biology- London
job bioinformatician job machine learning gene expression experimental design Job
6.5 years ago dezer ▴ 10
2
votes
6
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1.4k
views
DESeq2 Gene Expression Set up: Behavior vs Age
deseq2 experimental design
updated 6.5 years ago by 43k • written 6.5 years ago by • 0
4
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2
replies
1.4k
views
How does the function model.matrix (to define experimental design) really works ?
experimental design model.matrix edger
updated 7.0 years ago by ★ 7.9k • written 7.0 years ago by ▴ 20
1
vote
2
replies
1.7k
views
DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 7.2 years ago by 43k • written 7.2 years ago by • 0
0
votes
1
reply
3.5k
views
DESeq2 design model/contrasts question 3 level condition
deseq2 model design differential gene expression experimental design
updated 7.2 years ago by 43k • written 7.2 years ago by • 0
6
votes
1
reply
11k
views
DESeq2 interaction term in two-factor design, which contrasts?
deseq2 experimental design interaction model
updated 7.7 years ago by 43k • written 7.7 years ago by ▴ 30
1
vote
2
replies
4.9k
views
Multiple comparisons for DE analysis with DESeq2
deseq2 mirna-seq experimental design differential expression
updated 7.9 years ago by ▴ 690 • written 7.9 years ago by ▴ 10
1
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2
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1.8k
views
Trying to design a model(s) for a two factor RNA-seq experimental analysis in EdgeR with interaction
EdgeR RNAseq experimental design glm
updated 8.1 years ago by ★ 28k • written 8.1 years ago by • 0
0
votes
1
reply
1.1k
views
Genotypic difference design using deseq2
Deseq2 genotype experimental design
updated 8.1 years ago by 43k • written 8.1 years ago by ▴ 90
5
votes
2
replies
2.1k
views
DESeq2 design matrix for timecourse
deseq2 experimental design timecourse rnaseq model
updated 8.4 years ago by 43k • written 8.4 years ago by ▴ 20
2
votes
2
replies
1.5k
views
EdgeR experimental design matrix
edger differential gene expression experimental design
updated 8.8 years ago by ★ 28k • written 8.8 years ago by • 0
6
votes
1
reply
2.7k
views
DESeq2, difficulties with multi-factor design
DESeq2 multiple factor design experimental design contrast
updated 9.3 years ago by 43k • written 9.3 years ago by ▴ 60
5
votes
7
replies
2.4k
views
what conditions affect my gene (with limma?)
limma geo experimental design
updated 9.6 years ago by 52k • written 9.6 years ago by • 0
4
votes
3
replies
3.2k
views
DESeq2 - design for TCGA level 3 data
deseq2 tcga experimental design multiple factor design
updated 9.9 years ago by 43k • written 9.9 years ago by ▴ 40
1
vote
2
replies
1.9k
views
qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 9.9 years ago by 52k • written 9.9 years ago by ▴ 450
0
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4
replies
2.2k
views
Question: DESeq2 nested design, multifactor test
deseq2 experimental design
9.9 years ago Shucong Li ▴ 60
21 results • Page 1 of 1
Recent ...
Replies
Comment: Issue with Soft-Thresholding in WGCNA by dirty.cougar.risi • 0
Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […
Answer: compute_fasta_digest does not match Salmon index hash by Michael Love 43k
Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Answer: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
You can use the `AnnotationHub` ``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% sna…
Answer: List of Deprecated Packages for Bioc3.20 by shepherl 4.1k
HTqPCR has been fixed and will be re-instated in 3.21
Votes
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
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