Showing : exonmap • reset
2
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1.3k
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Best way to do quality control and analysis on Exon arrays
Annotation Cancer affy exonmap Annotation Cancer affy exonmap
updated 8.8 years ago by ▴ 10 • written 14.9 years ago by ★ 1.9k
2
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20
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5.4k
views
Important r packages not available for R version 3.1.1
exonmap exon array analysis bioconductor
9.3 years ago svlachavas ▴ 830
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912
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Exonmap & xmapcore covdesc variable problem
affy exonmap xmapcore affy exonmap xmapcore
11.9 years ago Prime, John ▴ 10
0
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1
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1.0k
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Easy way to map Exon array probes to coordinates?
Cancer exonmap xps Cancer exonmap xps
updated 12.7 years ago by ★ 3.9k • written 12.7 years ago by ▴ 260
0
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2
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1.0k
views
problems with Affymetrix probes id using exonmap and xmapcore
Annotation cdf exonmap xmapcore Annotation cdf exonmap xmapcore
13.1 years ago Tim Yates ▴ 250
0
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0
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820
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problems with Affymetrix probes id using exonmap and xmapcore
Annotation cdf exonmap xmapcore Annotation cdf exonmap xmapcore
13.1 years ago Gomez Moruno, Antonio ▴ 30
0
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934
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exonmap problems with rma normalization
Normalization cdf exonmap Normalization cdf exonmap
13.1 years ago Gomez Moruno, Antonio ▴ 30
0
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1
reply
898
views
ExonMap and xmap package question
probe limma convert exonmap probe limma convert exonmap
13.5 years ago Julie Zhu ★ 4.3k
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0
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854
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Human Affymetrix Exon microarrays
exonmap exonmap
13.6 years ago Ernest Turro ▴ 30
0
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1
reply
737
views
(no subject)
exonmap xmapcore exonmap xmapcore
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 10
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R: Doubt about the use of xmapcore Vs exonmap
exonmap xmapcore exonmap xmapcore
13.6 years ago Manca Marco PATH ▴ 340
0
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1
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1.1k
views
exonmap/xmapcore and splicing.index
exonmap xmapcore exonmap xmapcore
updated 13.7 years ago by ▴ 190 • written 13.7 years ago by ▴ 70
0
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7
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1.8k
views
exonmap/xmapcore error
exonmap exonmap
updated 13.9 years ago by ★ 1.1k • written 13.9 years ago by ▴ 270
0
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0
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764
views
Exonmap to xmapcore
exonmap xmapcore exonmap xmapcore
13.9 years ago Fong Chun Chan ▴ 130
0
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1
reply
905
views
exonMap problems
exonmap exonmap
updated 14.1 years ago by ▴ 250 • written 14.1 years ago by ▴ 40
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2
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1.2k
views
exon array annotation files
Annotation Cancer cdf exonmap Annotation Cancer cdf exonmap
updated 14.7 years ago by ▴ 190 • written 14.7 years ago by ▴ 970
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2
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1.1k
views
Affy Exon arrays
affy exonmap affy exonmap
updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ▴ 570
0
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0
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763
views
exonmap and splicing index
limma exonmap limma exonmap
15.2 years ago Mathieu Parent ▴ 30
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0
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765
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Exonmap and Limma
limma exonmap limma exonmap
15.2 years ago Mathieu Parent ▴ 30
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0
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654
views
Problem memory exonmap
exonmap exonmap
15.2 years ago Guido Leoni ▴ 200
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0
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944
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Bioconductor Digest, Vol 73, Issue 8
Microarray Annotation GO hgu133plus2 probe biomaRt flowViz exonmap Microarray Annotation
15.2 years ago ramesh aathe ▴ 10
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1
reply
912
views
running exonmap package and chimp arrays
exonmap exonmap
updated 15.2 years ago by ▴ 50 • written 15.2 years ago by ▴ 240
0
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9
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1.6k
views
specifications for exonmap database config file?
GO exonmap GO exonmap
updated 15.5 years ago by ★ 2.0k • written 15.5 years ago by ▴ 70
0
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0
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1.1k
views
Affymetrix Array Rat Gene 1.0 ST - some annotation challenges
Annotation Normalization probe affy PROcess oligo exonmap Annotation Normalization probe
15.5 years ago Alexander C Cambon ▴ 30
0
votes
1
reply
943
views
exonmap question: rma (& plier) crashes
exonmap exonmap
updated 15.8 years ago by ★ 1.1k • written 15.8 years ago by ▴ 70
0
votes
6
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1.6k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
cdf exonmap xps cdf exonmap xps
updated 15.9 years ago by ★ 3.9k • written 15.9 years ago by ▴ 190
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0
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926
views
exonmap error & questions (Affy mouse exon arrays)
exonmap exonmap
15.9 years ago Wolfgang Raffelsberger ▴ 160
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0
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721
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Affy EXON Array: iterPLIER or RMA
affy exonmap affy exonmap
16.1 years ago juancui ▴ 10
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0
replies
685
views
bugs in exonmap?
exonmap exonmap
16.1 years ago Xin Zheng ▴ 30
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0
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710
views
[Fwd: Re: exonmap, xmap and xmapbridge]
exonmap exonmap
16.3 years ago Paul Hammer ▴ 220
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10
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1.7k
views
exonmap RMA function
Microarray Cancer affyPLM exonmap Microarray Cancer affyPLM exonmap
updated 16.4 years ago by ▴ 250 • written 16.4 years ago by 25k
0
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2
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1.1k
views
exonmap questions
affy PROcess exonmap affy PROcess exonmap
updated 16.5 years ago by 66k • written 16.5 years ago by ▴ 890
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0
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810
views
exonmap package - MySQL error
exonmap exonmap
16.6 years ago Dykema, Karl ▴ 90
0
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0
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988
views
problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
16.7 years ago Wolfgang Raffelsberger ▴ 160
0
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4
replies
1.3k
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 16.8 years ago by 66k • written 16.8 years ago by ▴ 20
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1
reply
1.1k
views
Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 16.8 years ago by ▴ 120 • written 16.8 years ago by ▴ 10
0
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4
replies
1.4k
views
Problem with some exonmap X.to.Y functions
exonmap exonmap
updated 16.8 years ago by ★ 1.1k • written 16.8 years ago by ▴ 40
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0
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647
views
[Fwd: exonmap install problem] Resolution note
exonmap exonmap
16.8 years ago Sophie Gallina ▴ 40
0
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0
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648
views
exonmap install problem
Cancer exonmap Cancer exonmap
16.8 years ago Seth Falcon ★ 7.4k
0
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0
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788
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exonmap install problem
Microarray exonmap Microarray exonmap
16.8 years ago Sophie Gallina ▴ 40
0
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6
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1.3k
views
exonmap install
affy exonmap affy exonmap
updated 17.2 years ago by 66k • written 17.2 years ago by ★ 1.4k
41 results • Page 1 of 1
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Comment: How to compare subset of samples from VCF files by Marco • 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database by James W. MacDonald 66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database by luigi.faino • 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database by James W. MacDonald 66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Answer: makeExampleDESeqDataSet using pilot data by Michael Love 42k
`dispMeanRel` would be `dispersionFunction(dds)` from a pilot dataset. It's the relationship between dispersion and mean. `betaSD` is no…
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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