Bioconductor Exon usage

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DEXSeq Splicing Exon Usage

5.2 years ago gunjan.dikshit • 0

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dexseq genomicalignments exon usage

7.6 years ago igor ▴ 50

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1.9k

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DEXSeq differential exon usage exon usage

updated 9.4 years ago by Alejandro Reyes ★ 1.9k • written 9.4 years ago by biominer ▴ 10

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dexseq logfoldchange exon usage

9.4 years ago Assa Yeroslaviz ★ 1.5k

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1.2k

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dexseq exon usage

updated 10.1 years ago by Alejandro Reyes ★ 1.9k • written 10.1 years ago by Xavier Pastor ▴ 10

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Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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