Bioconductor Exon array analysis

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1.2k

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pd.huex.1.0.st.v2 exon array analysis

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by GENOMIC_region • 0

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1.1k

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exons exon array analysis

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by GENOMIC_region • 0

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1.7k

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by relathman ▴ 20

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1.9k

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onechannelgui exon array analysis R

9.5 years ago anna.dolnik • 0

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3.5k

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oligo exon array analysis

updated 9.8 years ago by Marc Carlson ★ 7.2k • written 9.9 years ago by Elena Serrano ▴ 30

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1.5k

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exomecopy exon array analysis CODEX

9.9 years ago kaushal Raj Chaudhary ▴ 10

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3.8k

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affymetrixchip GenechipHumanTranscriptomeArray2.0 exon array analysis

10.1 years ago svlachavas ▴ 840

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exonmap exon array analysis bioconductor

10.1 years ago svlachavas ▴ 840

8 results • Page 1 of 1

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Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR by Gordon Smyth 52k

I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

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Limma outputs different results for same sample?

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

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