Bioconductor Exon array analysis

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1.1k

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pd.huex.1.0.st.v2 exon array analysis

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by GENOMIC_region • 0

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1.1k

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exons exon array analysis

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by GENOMIC_region • 0

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1.7k

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by relathman ▴ 20

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1.9k

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onechannelgui exon array analysis R

9.4 years ago anna.dolnik • 0

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3.4k

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oligo exon array analysis

updated 9.7 years ago by Marc Carlson ★ 7.2k • written 9.7 years ago by Elena Serrano ▴ 30

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exomecopy exon array analysis CODEX

9.8 years ago kaushal Raj Chaudhary ▴ 10

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3.8k

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affymetrixchip GenechipHumanTranscriptomeArray2.0 exon array analysis

10.0 years ago svlachavas ▴ 840

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5.8k

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exonmap exon array analysis bioconductor

10.0 years ago svlachavas ▴ 840

8 results • Page 1 of 1

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Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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