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exome
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edgeR for looking at differences in coverage?
edgeR
exome
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
am3
• 0
0
votes
1
reply
1.2k
views
Whole exomes: number of genes, polymorphism
whole exome sequence
R
bioconductor
exome
7.8 years ago • updated 7.7 years ago
bioinf
▴ 10
3
votes
6
replies
1.9k
views
Whole exome: BAM statistics and other relevant information
rsamtools
whole exome sequence
bam
exome
R
7.8 years ago
bioinf
▴ 10
0
votes
0
replies
1.4k
views
any ideas on a workflow for exome seq data analysis with R?
exome
dnaseq
WES
8.4 years ago
arvand.akbari
• 0
0
votes
1
reply
1.6k
views
ExomeDepth Package Error Messages
cnv
exome
8.7 years ago
Bio152
▴ 150
5 results • Page
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Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error
by
James W. MacDonald
67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Comment: Identical samples after deseq2 batch effect removal
by
maripane
• 0
Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…
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A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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