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News: Bioconductor Course, Kenya 2025: Applications Open!
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News: Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
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News: European Bioconductor Conference 2023 planning
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News: News: BioCAsia2023 Abstract Submission & Registration Now Open!
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20 months ago Maria Doyle ▴ 100
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News: Bioconductor call for events!
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News: Registrations are now open for BioC Asia 2022
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2.6 years ago • updated 2.5 years ago Peter Hickey ▴ 750
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News: Public Calendar of Events
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4.9 years ago shepherl 4.1k
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News: EMBO | EMBL Symposium: The Molecular Basis and Evolution of Sexual Dimorphism
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5.3 years ago EMBL Events • 0
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News: Registrations are now open for BioC Asia 2019
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5.6 years ago Steve Pederson ▴ 170
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Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
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remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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