Showing : error • reset
0
votes
7
replies
2.9k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 13 months ago by 67k • written 13 months ago by • 0
12
votes
10
replies
12k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 9 months ago by • 0 • written 14 months ago by ▴ 20
0
votes
0
replies
461
views
proActiv - Error in estimateSizeFactorsForMatrix when using the proActiv function
proActiv error estimateSizeFactorsForMatrix
14 months ago Chris • 0
0
votes
1
reply
810
views
Problems when running GDC_prepare in R
TCGAbiolinks error GDC_prepare
14 months ago leon • 0
0
votes
3
replies
937
views
DiffBind issue with edgeR$bTagwise and DESeq2$fitType
Config DiffBind Error
updated 17 months ago by ★ 5.2k • written 17 months ago by • 0
0
votes
17
replies
4.1k
views
What causes this DESeq2 error at "fitting model and testing"?
deseq2 differential expression error
updated 18 months ago by • 0 • written 7.2 years ago by • 0
0
votes
1
reply
672
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB easyrun error mm10 Mus_musculus_Data
updated 19 months ago by 67k • written 19 months ago by • 0
0
votes
0
replies
684
views
Are LFQ workflow arguments from DEP package all required or optional?
LFQ R DEP error
20 months ago aymanreffai • 0
0
votes
8
replies
1.5k
views
fail to annotate chromosome data to single cell object
error SingleCell annotate
updated 13 months ago by • 0 • written 21 months ago by • 0
0
votes
2
replies
758
views
Error message trying to open downloaded package
error DEP
22 months ago kcpaul168 • 0
0
votes
0
replies
748
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult DEqMS sca.adj.pval error p-value
2.2 years ago Bastian • 0
0
votes
3
replies
1.2k
views
tximport error
error tximport
updated 2.3 years ago by 43k • written 2.3 years ago by • 0
0
votes
3
replies
2.7k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 2.4 years ago by 67k • written 2.4 years ago by • 0
0
votes
7
replies
1.7k
views
Centos 7.8, custom-compiled R-4.1: iPath_1.0.0 won't install
error iPath R compilation
3.0 years ago • updated 2.9 years ago wjb2130 • 0
0
votes
2
replies
1.1k
views
Error in TFBSTools at SitesetList
error TFBSTools R
3.1 years ago HELEN • 0
4
votes
9
replies
4.2k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 3.6 years ago by ★ 6.6k • written 3.8 years ago by ▴ 20
0
votes
3
replies
1.1k
views
bioconductor.org not reachable from EU region
error http429 server
3.7 years ago ashu.upadhyay2206 • 0
0
votes
2
replies
1.6k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error DESeq2 Install
updated 3.8 years ago by 67k • written 3.8 years ago by • 0
1
vote
2
replies
3.4k
views
error in DESeq2 results(dds)
DESeq2 datasetfrommatrix results error
3.8 years ago james • 0
3
votes
4
replies
3.3k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error mac DESeq2 GenomeInfoDb R
4.0 years ago • updated 3.9 years ago Dan ▴ 20
1
vote
1
reply
1.1k
views
Errors in installing RforProteomics package
error RforProteomics Install
updated 4.1 years ago by ★ 6.6k • written 4.1 years ago by • 0
0
votes
1
reply
883
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
4.5 years ago akhaira • 0
6
votes
6
replies
1.5k
views
Suggestion for next revision of edgeR User Guide re Design matrix setup
edger error
updated 4.6 years ago by 52k • written 4.6 years ago by • 0
0
votes
14
replies
2.8k
views
annFUN error TOPGO
TOPGO annFUN error
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
0
votes
0
replies
751
views
Error on FindOptimalBinning function
bhc error
4.8 years ago pavel.granalacant • 0
0
votes
0
replies
1.1k
views
Multicollinearity and pR2Y =0.1
opls-da error multicollinearity
4.9 years ago adriana.roca-fernandez • 0
0
votes
1
reply
1.2k
views
boxplot Error in Bioconductor
boxplot bioconductor R error
5.0 years ago l154359 • 0
0
votes
4
replies
1.1k
views
nucleR ERROR unable to find an inherited method for function peakDetection for signature
nucleosome peaks error Job
updated 5.0 years ago by 67k • written 5.0 years ago by • 0
0
votes
5
replies
2.0k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 5.1 years ago by ▴ 20 • written 5.1 years ago by • 0
0
votes
3
replies
981
views
Error in E-Eb Limma package
limma error E-Eb
updated 5.2 years ago by 52k • written 5.2 years ago by • 0
4
votes
7
replies
1.5k
views
bam files to hilbert curve
HilbertCurve error bamfiles GRobject
5.2 years ago adklts • 0
0
votes
6
replies
8.9k
views
Rhtslib - install error
Rhtslib installation error zlib
updated 5.2 years ago by • 0 • written 6.2 years ago by • 0
0
votes
1
reply
1.6k
views
DiffBind dba error
DiffBind dba R error
updated 5.3 years ago by ★ 5.2k • written 5.5 years ago by • 0
0
votes
1
reply
1.4k
views
Help with installation of readat package
readat error
updated 5.4 years ago by 4.1k • written 5.4 years ago by • 0
2
votes
2
replies
1.8k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks GDCprepare error
updated 5.4 years ago by ▴ 270 • written 5.4 years ago by ▴ 10
0
votes
1
reply
2.2k
views
R: oligo packages install error
oligo packages error
updated 5.5 years ago by 25k • written 5.5 years ago by • 0
0
votes
0
replies
1.0k
views
Error in parseGenBank
genbankr parseGenBank gbk error
5.5 years ago ashley.dederich • 0
2
votes
3
replies
1.2k
views
How can I overcome the error of "No residual degrees of freedom in linear model fits"?
limma microarray error
updated 5.5 years ago by ★ 1.5k • written 5.5 years ago by ▴ 80
0
votes
6
replies
4.7k
views
Error in getOneSeqFromBSgenomeMultipleSequences During singeR tutorial
error
5.5 years ago dfcarril • 0
0
votes
4
replies
2.1k
views
DESeq2 compare all_vs_all levels error
deseq2 error RNAseq
updated 5.5 years ago by ★ 1.4k • written 5.5 years ago by ▴ 30
0
votes
3
replies
1.2k
views
Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops cn.mops error
updated 5.5 years ago by 25k • written 5.5 years ago by • 0
0
votes
6
replies
2.2k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.6 years ago by • 0 • written 5.6 years ago by ▴ 10
0
votes
8
replies
3.0k
views
tximport command error
tx2gene txi error
updated 5.6 years ago by 67k • written 5.6 years ago by • 0
2
votes
6
replies
1.8k
views
EdgeR glmTreat error
edger error
updated 5.7 years ago by 67k • written 5.7 years ago by • 0
1
vote
1
reply
1.1k
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomaRt error
updated 5.7 years ago by 67k • written 5.7 years ago by ▴ 10
0
votes
1
reply
945
views
Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found
error wgcna affymetrix data
updated 5.7 years ago by ★ 3.0k • written 5.7 years ago by • 0
2
votes
6
replies
2.3k
views
featurecounts Rsubread ERROR on exon_id
R error software error Rsubread featurecounts
updated 5.7 years ago by ★ 3.6k • written 5.7 years ago by • 0
2
votes
3
replies
3.5k
views
DESeq2- preliminary study no replicates
deseq2 replicates error DESeqDataSetFromMatrix
updated 5.7 years ago by 43k • written 5.7 years ago by • 0
1
vote
1
reply
1.3k
views
Error in getBM(c("affy_rice", "ensembl_gene_id", "entrezgene", "external_gene_name"), : could not find function "featureNames"
annotation error biomaRT affy ricedataset
updated 5.7 years ago by ★ 6.6k • written 5.7 years ago by • 0
1
vote
2
replies
2.4k
views
Errors installing mzR package
proteomics error
updated 5.8 years ago by 1.6k • written 5.8 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
Locations • All
WEHI, Melbourne, Australia, 1 hour ago
30 N Gould St STE 39034 Sheridan, WY, 1 hour ago
Pakistan, 2 hours ago
Germany, 5 hours ago
Barcelona/Universitat Pompeu Fabra, 5 hours ago
Traffic: 486 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6