Bioconductor Epivizr

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epivizr metavizr

8.0 years ago Hector Corrada Bravo ▴ 60

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visualization epivizr

8.9 years ago Hector Corrada Bravo ▴ 60

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epivizr

updated 9.0 years ago by Hector Corrada Bravo ▴ 60 • written 9.0 years ago by ashley.doane ▴ 20

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epivizr visualization

10.5 years ago Hector Corrada Bravo ▴ 60

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epivizr epivizr

updated 10.9 years ago by Hector Corrada Bravo ▴ 60 • written 10.9 years ago by Julian Gehring ★ 1.3k

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Cheminformatics Visualization Cancer Ovarian DEXSeq minfi DESeq2 BaseSpaceR epivizr minfi

11.8 years ago Martin Morgan 25k

6 results • Page 1 of 1

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Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Votes

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

A: Normalized counts from DESeq2 results in similar but not equal total read count?

A: DESeq2: Different Dispersions for different sample groups

Awards • All

Great Question to inzirio ▴ 10