Bioconductor Epicarray

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limma epicarray IlluminaHumanMethylationEPICanno.ilm10b2.hg19

written 4 months ago by Melisa Tecik • 0

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stattistics epicarray Epigenetics DMRcate

updated 17 months ago by James W. MacDonald 68k • written 17 months ago by Jitendra ▴ 10

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linearregression epicarray MethylationArray limma

20 months ago • updated 19 months ago Jitendra ▴ 10

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RnBeads minfiData minfi EPICarray

updated 23 months ago by Basti ▴ 780 • written 23 months ago by Jitendra ▴ 10

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champ.load epicarray ChAMP methylationArrayAnalysis

23 months ago arisarkar88 ▴ 40

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methylationArrayAnalysis EPICarray ChAMP Champ.SVD

4.0 years ago arisarkar88 ▴ 40

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ChAMP methylationepic epicarray epigenomics

updated 7.5 years ago by rcavalca ▴ 140 • written 7.5 years ago by karthikrpad ▴ 10

7 results • Page 1 of 1

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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…

Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

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Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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