Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ensemblVEP
•
reset
0
votes
0
replies
352
views
RFC: significant changes to ensemblVEP package
VariantAnnotation
ensemblVEP
11 months ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
559
views
Differential express genes in one group across all time points
DESeq2
edgeR
BP4RNAseq
ensemblVEP
updated 20 months ago by
Michael Love
43k • written 20 months ago by
DHARMESH
• 0
2
votes
3
replies
2.1k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
2.1 years ago • updated 2.0 years ago
jtaylor-predicine
• 0
0
votes
1
reply
958
views
Ensembl REST API Endpoints
ensemblVEP
EnsDb.Hsapiens.v79
updated 3.0 years ago by
Kevin Blighe
★ 4.0k • written 3.0 years ago by
anasjamshed1994
• 0
0
votes
2
replies
1.6k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
3.9 years ago • updated 3.7 years ago
mchakiachvili
▴ 20
0
votes
2
replies
1.3k
views
questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
R
ensemblVEP
gene annotation
Variant Effect Predictor
Ensembl VEP
5.4 years ago
ycchang
• 0
2
votes
3
replies
1.8k
views
Error in VCF parsing with VariantAnnotation
software error
VariantAnnotation
ensemblVEP
updated 5.8 years ago by
Valerie Obenchain
★ 6.8k • written 5.8 years ago by
mumichae
▴ 20
2
votes
5
replies
2.6k
views
ensemblVEP: "Ensembl VEP is not installed in your path."
software error
ensemblVEP
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
patrick.turko
▴ 10
0
votes
4
replies
1.5k
views
ensemblVEP supported versions, and troubleshooting
ensemblVEP
updated 6.8 years ago by
shepherl
4.1k • written 6.8 years ago by
Janet Young
▴ 740
0
votes
0
replies
1.2k
views
error using ensemblVEP v88 when querying rs67418256 with basic(param_vep)$everything=TRUE
ensemblvep
7.6 years ago
mlrubio
• 0
0
votes
0
replies
1.8k
views
problem using ensemblVEP with GRC37
ensemblvep
grch37
7.6 years ago
mikko.arvas
• 0
0
votes
1
reply
1.0k
views
ensemblVEP problem with MySQL database
ensemblvep
8.4 years ago
clairelsimpson
▴ 10
2
votes
4
replies
1.6k
views
parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblVEP
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
kevin.rue
▴ 350
2
votes
3
replies
2.2k
views
ensemblVEP support for Ensembl API version 78
ensemblvep
updated 10.0 years ago by
Valerie Obenchain
★ 6.8k • written 10.0 years ago by
Moiz Bootwalla
▴ 50
0
votes
2
replies
2.4k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 11.0 years ago by
Valerie Obenchain
★ 6.8k • written 11.0 years ago by
Thomas Sandmann
▴ 30
0
votes
0
replies
1.3k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Cancer
MLInterfaces
bridge
ensemblVEP
AnnotationHub
Cancer
MLInterfaces
bridge
ensemblVEP
11.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.4k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation
Annotation
PolyPhen
SIFT
annotate
VariantAnnotation
ensemblVEP
Annotation
11.1 years ago
Valerie Obenchain
★ 6.8k
0
votes
5
replies
1.4k
views
ensemblVEP, variant_effect_predictor versions and release schedule
ensemblVEP
ensemblVEP
updated 11.2 years ago by
Valerie Obenchain
★ 6.8k • written 11.2 years ago by
Guest User
★ 13k
0
votes
5
replies
2.2k
views
ensemblVEP: passing on coverage / frequency information
Coverage
VariantTools
ensemblVEP
Coverage
VariantTools
ensemblVEP
updated 11.7 years ago by
Valerie Obenchain
★ 6.8k • written 11.7 years ago by
Guest User
★ 13k
19 results • Page
1 of 1
Recent ...
Replies
Comment: Packages don't update, but no error or warning is thrown
by
neighsanlo
• 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
freemanmclaughlin9969289
• 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc
by
Nan
• 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Answer: EuroBioC2023 abstract submission closing soon!
by
excess.gecko.shso
• 0
Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…
Answer: EuroBioC2024 abstract submission is open!
by
excess.gecko.shso
• 0
EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
Awards
• All
Teacher
to
dsull
▴ 40
Popular Question
to
bpshtiwan
▴ 10
Popular Question
to
Ali Barry
▴ 40
Popular Question
to
gabriel.hoffman
▴ 170
Popular Question
to
Jenny Drnevich
★ 2.0k
Locations
• All
The city by the bay,
18 minutes ago
Pakistan,
50 minutes ago
WEHI, Melbourne, Australia,
2 hours ago
Canada,
3 hours ago
Vietnam,
4 hours ago
Traffic: 555 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6