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ensemblVEP
•
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0
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replies
415
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RFC: significant changes to ensemblVEP package
VariantAnnotation
ensemblVEP
15 months ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
632
views
Differential express genes in one group across all time points
DESeq2
edgeR
BP4RNAseq
ensemblVEP
updated 2.0 years ago by
Michael Love
43k • written 2.0 years ago by
DHARMESH
• 0
2
votes
3
replies
2.4k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
2.4 years ago
jtaylor-predicine
• 0
0
votes
1
reply
1.1k
views
Ensembl REST API Endpoints
ensemblVEP
EnsDb.Hsapiens.v79
updated 3.3 years ago by
Kevin Blighe
★ 4.0k • written 3.3 years ago by
anasjamshed1994
• 0
0
votes
2
replies
1.8k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
4.2 years ago • updated 4.0 years ago
mchakiachvili
▴ 20
0
votes
2
replies
1.6k
views
questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
R
ensemblVEP
gene annotation
Variant Effect Predictor
Ensembl VEP
5.8 years ago
ycchang
• 0
2
votes
3
replies
2.0k
views
Error in VCF parsing with VariantAnnotation
software error
VariantAnnotation
ensemblVEP
updated 6.1 years ago by
Valerie Obenchain
★ 6.8k • written 6.1 years ago by
mumichae
▴ 20
2
votes
5
replies
2.8k
views
ensemblVEP: "Ensembl VEP is not installed in your path."
software error
ensemblVEP
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
patrick.turko
▴ 10
0
votes
4
replies
1.7k
views
ensemblVEP supported versions, and troubleshooting
ensemblVEP
updated 7.1 years ago by
shepherl
4.1k • written 7.1 years ago by
Janet Young
▴ 740
0
votes
0
replies
1.3k
views
error using ensemblVEP v88 when querying rs67418256 with basic(param_vep)$everything=TRUE
ensemblvep
8.0 years ago
mlrubio
• 0
0
votes
0
replies
2.0k
views
problem using ensemblVEP with GRC37
ensemblvep
grch37
8.0 years ago
mikko.arvas
• 0
0
votes
1
reply
1.1k
views
ensemblVEP problem with MySQL database
ensemblvep
8.7 years ago
clairelsimpson
▴ 10
2
votes
4
replies
1.7k
views
parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblVEP
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
kevin.rue
▴ 350
2
votes
3
replies
2.3k
views
ensemblVEP support for Ensembl API version 78
ensemblvep
updated 10.4 years ago by
Valerie Obenchain
★ 6.8k • written 10.4 years ago by
Moiz Bootwalla
▴ 50
0
votes
2
replies
2.5k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 11.3 years ago by
Valerie Obenchain
★ 6.8k • written 11.3 years ago by
Thomas Sandmann
▴ 30
0
votes
0
replies
1.3k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Cancer
MLInterfaces
bridge
ensemblVEP
AnnotationHub
Cancer
MLInterfaces
bridge
ensemblVEP
11.3 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.5k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation
Annotation
PolyPhen
SIFT
annotate
VariantAnnotation
ensemblVEP
Annotation
11.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
5
replies
1.5k
views
ensemblVEP, variant_effect_predictor versions and release schedule
ensemblVEP
ensemblVEP
updated 11.6 years ago by
Valerie Obenchain
★ 6.8k • written 11.6 years ago by
Guest User
★ 13k
0
votes
5
replies
2.4k
views
ensemblVEP: passing on coverage / frequency information
Coverage
VariantTools
ensemblVEP
Coverage
VariantTools
ensemblVEP
updated 12.1 years ago by
Valerie Obenchain
★ 6.8k • written 12.1 years ago by
Guest User
★ 13k
19 results • Page
1 of 1
Recent ...
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Comment: Design formula for circadian time-course data for vst() function
by
Vishnu
• 0
Thank you so much for your reply.
Comment: Analyzing TnSeq data with DESeq2
by
Tom
• 0
[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…
Answer: Design formula for circadian time-course data for vst() function
by
ATpoint
★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Comment: Module membership vs gene significance result and Modules-trait relationships re
by
Vinaya
• 0
Hi. I am having the same issue, and haven't found a solution still.
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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