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ensemblVEP
•
reset
0
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replies
203
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RFC: significant changes to ensemblVEP package
VariantAnnotation
ensemblVEP
5 months ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
438
views
Differential express genes in one group across all time points
DESeq2
edgeR
BP4RNAseq
ensemblVEP
updated 14 months ago by
Michael Love
42k • written 14 months ago by
DHARMESH
• 0
2
votes
3
replies
1.7k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
18 months ago
jtaylor-predicine
• 0
0
votes
1
reply
826
views
Ensembl REST API Endpoints
ensemblVEP
EnsDb.Hsapiens.v79
updated 2.5 years ago by
Kevin Blighe
★ 3.9k • written 2.5 years ago by
anasjamshed1994
• 0
0
votes
2
replies
1.4k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
3.4 years ago • updated 3.2 years ago
mchakiachvili
▴ 20
0
votes
2
replies
1.1k
views
questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
R
ensemblVEP
gene annotation
Variant Effect Predictor
Ensembl VEP
5.0 years ago
ycchang
• 0
2
votes
3
replies
1.5k
views
Error in VCF parsing with VariantAnnotation
software error
VariantAnnotation
ensemblVEP
updated 5.3 years ago by
Valerie Obenchain
★ 6.8k • written 5.3 years ago by
mumichae
▴ 20
2
votes
5
replies
2.3k
views
ensemblVEP: "Ensembl VEP is not installed in your path."
software error
ensemblVEP
updated 5.3 years ago by
Martin Morgan
25k • written 5.3 years ago by
patrick.turko
▴ 10
0
votes
4
replies
1.3k
views
ensemblVEP supported versions, and troubleshooting
ensemblVEP
updated 6.3 years ago by
shepherl
3.9k • written 6.3 years ago by
Janet Young
▴ 740
0
votes
0
replies
1.1k
views
error using ensemblVEP v88 when querying rs67418256 with basic(param_vep)$everything=TRUE
ensemblvep
7.1 years ago
mlrubio
• 0
0
votes
0
replies
1.7k
views
problem using ensemblVEP with GRC37
ensemblvep
grch37
7.1 years ago
mikko.arvas
• 0
0
votes
1
reply
910
views
ensemblVEP problem with MySQL database
ensemblvep
7.9 years ago
clairelsimpson
▴ 10
2
votes
4
replies
1.4k
views
parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblVEP
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
kevin.rue
▴ 350
2
votes
3
replies
2.1k
views
ensemblVEP support for Ensembl API version 78
ensemblvep
updated 9.5 years ago by
Valerie Obenchain
★ 6.8k • written 9.5 years ago by
Moiz Bootwalla
▴ 50
0
votes
2
replies
2.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 10.5 years ago by
Valerie Obenchain
★ 6.8k • written 10.5 years ago by
Thomas Sandmann
▴ 30
0
votes
0
replies
1.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Cancer
MLInterfaces
bridge
ensemblVEP
AnnotationHub
Cancer
MLInterfaces
bridge
ensemblVEP
10.5 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.3k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation
Annotation
PolyPhen
SIFT
annotate
VariantAnnotation
ensemblVEP
Annotation
10.6 years ago
Valerie Obenchain
★ 6.8k
0
votes
5
replies
1.3k
views
ensemblVEP, variant_effect_predictor versions and release schedule
ensemblVEP
ensemblVEP
updated 10.7 years ago by
Valerie Obenchain
★ 6.8k • written 10.7 years ago by
Guest User
★ 13k
0
votes
5
replies
2.0k
views
ensemblVEP: passing on coverage / frequency information
Coverage
VariantTools
ensemblVEP
Coverage
VariantTools
ensemblVEP
updated 11.2 years ago by
Valerie Obenchain
★ 6.8k • written 11.2 years ago by
Guest User
★ 13k
19 results • Page
1 of 1
Recent ...
Replies
Answer: Ranking the GSEA Results
by
Michael Love
42k
Some posts on this topic: https://www.google.com/search?q=site%3Asupport.bioconductor.org+GSEA+ranking+DESeq2
Answer: Advice on appropriateness of an offset in glmGamPoi/edgeR
by
Gordon Smyth
51k
edgeR allows observation specific offsets (as already pointed out), although I am not confident that would be a reliable solution to your p…
Comment: Research Project - Expanding search funtionality on the GEO database
by
gallantk5
• 0
Thank you I will take a look at those !
Comment: Research Project - Expanding search funtionality on the GEO database
by
gallantk5
• 0
I will send you an email and talk to my advisor about setting up a meeting. Thank you !
Comment: Research Project - Expanding search funtionality on the GEO database
by
Sean Davis
21k
You can use the Bioconductor Annotation packages for the Affymetrix chips of interest. - https://bioconductor.org/packages/release/BiocVie…
Votes
Answer: DESeq2 time course using fitted splines
Answer: DESeq2 time course using fitted splines
Comment: Difference between enrichGO results and Enrichr website results
Answer: Struggling to convert a large list of non-model genes into human orthologs, any
A: makeContrasts from limma overides "i" as a varible
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21k
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Guido Hooiveld
★ 4.0k
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25k
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Wolfgang Huber
★ 13k
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