Bioconductor Enrichment analysis

Showing : enrichment analysis • reset

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1.6k

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dmrcate enrichment analysis epic array goregion missmethyl

updated 3.6 years ago by Jovana Maksimovic ▴ 20 • written 4.6 years ago by yoursbassanio ▴ 10

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5.6k

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microarray limma kegg ENTREZ enrichment analysis

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by omarrafiqued ▴ 50

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1.2k

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gosummaries gene ontology enrichment analysis

7.0 years ago jan.soderman • 0

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6.1k

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reactomepa pathway analysis enrichment analysis clusterprofiler

updated 7.2 years ago by Guangchuang Yu ★ 1.2k • written 7.2 years ago by Miguel.Cosenza ▴ 10

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4.2k

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clusterprofiler enrichment analysis

updated 8.1 years ago by Guangchuang Yu ★ 1.2k • written 8.1 years ago by fizer ▴ 40

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1.8k

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leading edge analysis enrichment analysis

8.3 years ago Adrian Johnson ▴ 330

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6.4k

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GSEA enrichment analysis gseabase

updated 8.6 years ago by Gordon Smyth 52k • written 8.6 years ago by Matthias Z. ▴ 20

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1.5k

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gene ontology goslim enrichment analysis gene annotation

8.8 years ago mirko • 0

8 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k