Bioconductor Enrichment analysis

Showing : enrichment analysis • reset

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1.7k

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dmrcate enrichment analysis epic array goregion missmethyl

updated 3.8 years ago by Jovana Maksimovic ▴ 20 • written 4.8 years ago by yoursbassanio ▴ 10

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5.9k

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microarray limma kegg ENTREZ enrichment analysis

updated 5.2 years ago by Gordon Smyth 52k • written 5.2 years ago by omarrafiqued ▴ 50

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1.3k

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gosummaries gene ontology enrichment analysis

7.2 years ago jan.soderman • 0

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6.7k

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reactomepa pathway analysis enrichment analysis clusterprofiler

updated 7.4 years ago by Guangchuang Yu ★ 1.2k • written 7.5 years ago by Miguel.Cosenza ▴ 10

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4.4k

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clusterprofiler enrichment analysis

updated 8.3 years ago by Guangchuang Yu ★ 1.2k • written 8.3 years ago by fizer ▴ 40

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1.9k

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leading edge analysis enrichment analysis

8.6 years ago Adrian Johnson ▴ 330

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6.7k

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GSEA enrichment analysis gseabase

updated 8.9 years ago by Gordon Smyth 52k • written 8.9 years ago by Matthias Z. ▴ 20

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1.6k

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gene ontology goslim enrichment analysis gene annotation

9.0 years ago mirko • 0

8 results • Page 1 of 1

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Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Votes

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Comment: edgeR::cpm() results in negative values from raw counts of 0

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Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k