Showing : enrichment analysis • reset
0
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6
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1.6k
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Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 3.6 years ago by ▴ 20 • written 4.6 years ago by ▴ 10
6
votes
6
replies
5.7k
views
Finding enriched pathways from a gene list.
microarray limma kegg ENTREZ enrichment analysis
updated 5.0 years ago by 52k • written 5.0 years ago by ▴ 50
0
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0
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1.3k
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Error using gosummaries (GOsummaries) on small log2 fold change values
gosummaries gene ontology enrichment analysis
7.1 years ago jan.soderman • 0
3
votes
2
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6.2k
views
Pathway analysis using ReactomePA::enrichPathway(): doubts about minGSSize and maxGSSize arguments
reactomepa pathway analysis enrichment analysis clusterprofiler
updated 7.3 years ago by ★ 1.2k • written 7.3 years ago by ▴ 10
2
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5
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4.2k
views
GO enrichment comparison with other programs
clusterprofiler enrichment analysis
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by ▴ 40
0
votes
0
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1.8k
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Leading edge analysis
leading edge analysis enrichment analysis
8.4 years ago Adrian Johnson ▴ 330
9
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6
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6.4k
views
GSEA-like enrichment score calculation
GSEA enrichment analysis gseabase
updated 8.7 years ago by 52k • written 8.7 years ago by ▴ 20
0
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0
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1.5k
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Create list of genes within each GOslim term
gene ontology goslim enrichment analysis gene annotation
8.8 years ago mirko • 0
8 results • Page 1 of 1
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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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