Bioconductor DropletUtils

Showing : dropletUtils • reset

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1.4k

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DropletUtils droplet

written 13 months ago by pcantalupo ▴ 10

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875

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DropletUtils

updated 13 months ago by ATpoint ★ 4.6k • written 2.2 years ago by Dario Strbenac ★ 1.5k

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1.0k

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DropletUtils SingleCellData

updated 16 months ago by ATpoint ★ 4.6k • written 17 months ago by p.vlachou-efstathiou • 0

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2.1k

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read10xCounts DropletUtils

23 months ago fdumetz • 0

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3.2k

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.4 years ago Peter Hickey ▴ 740

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1.3k

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CellBarcode DropletUtils emptyDrops() Cellranger scRNAseq

updated 2.6 years ago by rohitsatyam102 ▴ 20 • written 2.9 years ago by gregoire.destreel • 0

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839

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DropletUtils

updated 2.9 years ago by Aaron Lun ★ 28k • written 2.9 years ago by mikhael.manurung ▴ 280

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1.2k

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DropletUtils

updated 3.0 years ago by Aaron Lun ★ 28k • written 3.0 years ago by jma1991 ▴ 70

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1.7k

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DropletUtils

3.6 years ago wesselyf • 0

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1.3k

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DropletUtils

updated 3.6 years ago by Aaron Lun ★ 28k • written 3.6 years ago by rohitsatyam102 ▴ 20

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1.3k

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DropletUtils

3.6 years ago rohitsatyam102 ▴ 20

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1.5k

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DropletUtils scRNAseq

updated 3.8 years ago by Aaron Lun ★ 28k • written 3.9 years ago by Peter Hickey ▴ 740

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1.2k

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DropletUtils emptyDrops 10x

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by Peter Hickey ▴ 740

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2.2k

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SingleCellExperiment DropletUtils SingleCellData

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by msn ▴ 10

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948

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DropletUtils

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by mhalache • 0

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2.3k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.2 years ago by Aaron Lun ★ 28k • written 5.3 years ago by C T ▴ 140

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1.9k

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10x genomics DropletUtils single cell RNA seq

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by gil.stelzer • 0

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1.5k

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swappeddrops dropletutils

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by rosano • 0

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1.3k

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DropletUtils

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by jmanning • 0

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5.0k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.4 years ago by Stefano Mangiola ▴ 20 • written 5.4 years ago by shbrief ▴ 20

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1.0k

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scran dropletUtils scater scRNA-Seq

5.5 years ago hamza_karakurt ▴ 60

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1.9k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Steve Pederson ▴ 170

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1.3k

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dropletutils emptydrops

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by rosano • 0

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1.2k

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swappedDrops DropletUtils

5.7 years ago • updated 5.6 years ago joseph.joonsang • 0

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1.5k

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dropletutils swappeddrops

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by rosano • 0

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1.1k

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dropletutils

updated 5.7 years ago by s1437643 ▴ 20 • written 5.7 years ago by jma1991 ▴ 70

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1.5k

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DropletUtils Bioc-devel

5.7 years ago Matthew Thornton ▴ 380

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2.2k

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DropletUtils h5

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Matthew Thornton ▴ 380

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1.3k

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DropletUtils 10X 5` TCR single cells

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by xingxd16 ▴ 20

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1.3k

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DropletUtils Bioconductor singel cell

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by xingxd16 ▴ 20

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7.9k

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single-cell 10X Cell calling DropletUtils cellranger

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by xingxd16 ▴ 20

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1.5k

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dropseq dropletutils droplet

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by Bogdan ▴ 670

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1.2k

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dropletutils

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by jmanning • 0

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2.9k

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singlecellexperiment dropletutils simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Peter Hickey ▴ 740

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1.5k

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DropletUtils

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by fabrost • 0

35 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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