Bioconductor Dna

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DNA minfiData minfiDataEPIC DNAMethylation minfi

6 weeks ago user_bioinfo • 0

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845

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DNA repeats

2.2 years ago me-nobody • 0

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1.1k

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 3.4 years ago by James W. MacDonald 68k • written 3.4 years ago by HELEN • 0

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1.4k

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software codon usage bias dna

updated 5.3 years ago by anamaria ▴ 10 • written 5.3 years ago by jol.espinoz ▴ 40

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781

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DNA alphabet

updated 6.1 years ago by James W. MacDonald 68k • written 6.1 years ago by fjia304 • 0

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2.2k

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decipher DNA biostrings

updated 7.3 years ago by Erik Wright ▴ 150 • written 7.3 years ago by reubenmcgregor88 • 0

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3.0k

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biostrings mask repeatmasker DNA

updated 4.2 years ago by ivantsers • 0 • written 7.4 years ago by beausoleilmo • 0

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1.6k

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ABI sequence DNA melting curve

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by Prasanth ▴ 20

8 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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