Bioconductor Dna

Showing : dna • reset

vote

replies

372

views

DNA minfiData minfiDataEPIC DNAMethylation minfi

2 days ago • updated 1 day ago user_bioinfo • 0

votes

replies

797

views

DNA repeats

2.1 years ago me-nobody • 0

votes

1.1k

views

TFBSTools DNASeqData readFASTA DNA RStudio

updated 3.3 years ago by James W. MacDonald 68k • written 3.3 years ago by HELEN • 0

vote

1.3k

views

software codon usage bias dna

updated 5.2 years ago by anamaria ▴ 10 • written 5.2 years ago by jol.espinoz ▴ 40

votes

763

views

DNA alphabet

updated 6.0 years ago by James W. MacDonald 68k • written 6.0 years ago by fjia304 • 0

votes

replies

2.2k

views

decipher DNA biostrings

updated 7.2 years ago by Erik Wright ▴ 150 • written 7.2 years ago by reubenmcgregor88 • 0

votes

replies

2.9k

views

biostrings mask repeatmasker DNA

updated 4.1 years ago by ivantsers • 0 • written 7.3 years ago by beausoleilmo • 0

votes

1.6k

views

ABI sequence DNA melting curve

updated 9.7 years ago by Hervé Pagès 16k • written 9.7 years ago by Prasanth ▴ 20

8 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

Awards • All