Bioconductor Dna

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DNA minfiData minfiDataEPIC DNAMethylation minfi

9 weeks ago user_bioinfo • 0

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DNA repeats

2.2 years ago me-nobody • 0

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 3.5 years ago by James W. MacDonald 68k • written 3.5 years ago by HELEN • 0

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software codon usage bias dna

updated 5.4 years ago by anamaria ▴ 10 • written 5.4 years ago by jol.espinoz ▴ 40

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DNA alphabet

updated 6.1 years ago by James W. MacDonald 68k • written 6.1 years ago by fjia304 • 0

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decipher DNA biostrings

updated 7.4 years ago by Erik Wright ▴ 150 • written 7.4 years ago by reubenmcgregor88 • 0

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biostrings mask repeatmasker DNA

updated 4.3 years ago by ivantsers • 0 • written 7.5 years ago by beausoleilmo • 0

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ABI sequence DNA melting curve

updated 9.9 years ago by Hervé Pagès 16k • written 9.9 years ago by Prasanth ▴ 20

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Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…

Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

Comment: DESeq2 Design controlling for gender by donnycrimson • 0

On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by donnycrimson • 0

Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …

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remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

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