Bioconductor Dmr analysis

Showing : dmr analysis • reset

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7.0k

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champ dmr analysis

updated 4 months ago by tahirah.yasmin2014 • 0 • written 8.7 years ago by Shicheng Guo • 0

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1.1k

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medips medip-seq dna methylation dmr analysis

updated 6.0 years ago by Lukas Chavez ▴ 570 • written 6.0 years ago by mtefit • 0

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2.2k

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bumphunter minfi lmer dmrcate dmr analysis

updated 6.5 years ago by Tim Peters ▴ 200 • written 6.5 years ago by Ashlynn • 0

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1.4k

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illumina methylationepic 450k limma minfi dmr analysis dmr

updated 7.7 years ago by Aaron Lun ★ 28k • written 7.7 years ago by Ellen O • 0

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1.7k

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dmrcate dmr analysis dmr

updated 7.8 years ago by Tim Peters ▴ 200 • written 7.8 years ago by alexandria.andrayas ▴ 10

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3.4k

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methylation dmr analysis bumphunter

updated 7.9 years ago by James W. MacDonald 67k • written 7.9 years ago by chelsey.ju • 0

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4.7k

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bumphunter DMR DMR analysis minfi bioconductor

updated 7.9 years ago by rafa ▴ 60 • written 7.9 years ago by chelsey.ju • 0

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1.5k

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biseq methylation dmr analysis

updated 7.9 years ago by Katja Hebestreit ▴ 130 • written 7.9 years ago by jjalmagro • 0

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1.2k

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seqlm IRanges R namespace dmr analysis

8.4 years ago calen.p.ryan • 0

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1.5k

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ChAMP minfi DMR dmr analysis lasso

9.1 years ago AST ▴ 60

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1.6k

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dmr analysis dmrcate

updated 9.3 years ago by andrew.j.skelton73 ▴ 370 • written 9.3 years ago by irini.liampa • 0

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1.9k

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methylation DMR analysis

9.7 years ago parker • 0

12 results • Page 1 of 1

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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

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A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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