Bioconductor Distancetonearest

Showing : distancetonearest • reset

votes

replies

1.0k

views

rtracklayer ranges distanceToNearest

12 months ago robjohn70000 • 0

votes

replies

962

views

GenomicRanges GenomicFeatures grange distanceToNearest R

5.2 years ago rmash ▴ 20

votes

1.3k

views

GenomicRanges distancetonearest strandedness

updated 6.8 years ago by Valerie Obenchain ★ 6.8k • written 6.8 years ago by shraddha.pai • 0

votes

replies

1.5k

views

GRanges distancetonearest

updated 7.1 years ago by Julie Zhu ★ 4.3k • written 7.2 years ago by chitsazanalex ▴ 10

votes

replies

5.0k

views

chipenrich granges distancetonearest function dataframe

7.2 years ago rbronste ▴ 60

vote

replies

2.4k

views

genomicranges DistanceToNearest

updated 8.4 years ago by Valerie Obenchain ★ 6.8k • written 8.4 years ago by roladali ▴ 20

6 results • Page 1 of 1

Recent ...

Replies

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

Awards • All

Teacher to Axel Klenk ★ 1.1k