Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
dispersion
•
reset
2
votes
2
replies
2.8k
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2
medianofratiostransformation
StatisticalMethod
Normalization
dispersion
15 months ago
Linton
• 0
0
votes
3
replies
1.1k
views
Dispersion outliers genes
Dispersion
DESeq2
22 months ago
raya.fai
▴ 60
1
vote
1
reply
1.2k
views
Dispersion estimates with DESeq2
dispersionestimates
dispersion
DESeq2
estimates
deseq2
updated 2.7 years ago by
Michael Love
43k • written 2.7 years ago by
Julia
▴ 10
1
vote
2
replies
1.8k
views
Design formula in DESeq2
groups
dispersion
DESeq2
desing
3.3 years ago
m.glymenaki
• 0
4
votes
5
replies
1.7k
views
No counts, just fold change data
EdgeR
Estimation
Dispersion
3.8 years ago
Manal
• 0
0
votes
0
replies
711
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 4.0 years ago by
Michael Love
43k • written 4.0 years ago by
catalina.gonzalez-gomez
• 0
3
votes
6
replies
3.8k
views
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
Dispersion
RNA-seq
DESeq2
Multiple-group
updated 4.1 years ago by
Michael Love
43k • written 4.4 years ago by
Kelen
▴ 10
0
votes
2
replies
1.1k
views
Normalization and dispersion estimates in timeseries data with highly variable read numbers
EdgeR
dispersion
normalization
updated 5.1 years ago by
Gordon Smyth
52k • written 5.1 years ago by
Ruben.wauters
• 0
3
votes
3
replies
2.2k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 5.8 years ago by
onlychainsaw2019
• 0 • written 6.2 years ago by
ilovesuperheroes1993
• 0
0
votes
6
replies
2.0k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
5.9 years ago
fiona.dick91
▴ 60
0
votes
5
replies
3.0k
views
Dispersion calculation by DESeq2
DESeq2
dispersion
6.2 years ago
eva-m.petit
• 0
0
votes
4
replies
1.8k
views
DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2
dispersion
updated 6.2 years ago by
Michael Love
43k • written 6.2 years ago by
emilio.marmol
• 0
3
votes
3
replies
1.7k
views
DESseq2: Why can the dispersion be generelized over the conditions?
deseq2
dispersion
estimatedispersions
updated 6.8 years ago by
Ryan C. Thompson
★ 7.9k • written 6.8 years ago by
Mr.RB
▴ 20
8
votes
12
replies
12k
views
EdgeR: Explaning dispersion types to newbies
edger
dispersion
estimatedispersions
visualization
teaching
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
Mr.RB
▴ 20
0
votes
13
replies
7.2k
views
DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2
dispersion
7.0 years ago
Frederik Ziebell
▴ 30
0
votes
11
replies
2.6k
views
Strange dispersion plot
deseq2
dispersion
7.1 years ago
Moose123
• 0
5
votes
7
replies
8.1k
views
DESeq2 dispersion and p-value histograms
deseq2
rnaseq
fdrtool
dispersion
updated 7.4 years ago by
Bernd Klaus
▴ 610 • written 7.4 years ago by
rrcutler
▴ 70
1
vote
2
replies
1.3k
views
2-Factor Experiment in edgeR, Effect of no reps in one set and two reps in others
rnaseq
edger
differential expression
dispersion
updated 8.4 years ago by
Ryan C. Thompson
★ 7.9k • written 8.4 years ago by
nancyjwahl7
• 0
4
votes
3
replies
2.0k
views
How to get dispersion values for DESeq2
deseq2
dispersion
R
updated 8.8 years ago by
Michael Love
43k • written 8.8 years ago by
hiraksarkar.cs
▴ 10
1
vote
2
replies
1.6k
views
Common dispersion from estimateGLMRobustDisp()
edgeR
dispersion
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
Jane Merlevede
▴ 90
1
vote
3
replies
2.4k
views
Error Estimating the NB Dispersion of a Dataset
dispersion
edgeR
updated 8.8 years ago by
Gordon Smyth
52k • written 8.8 years ago by
humberto_munoz
• 0
0
votes
1
reply
1.4k
views
How do I turn off dispersion in DESeq2?
deseq2
dispersion
updated 9.1 years ago by
Michael Love
43k • written 9.1 years ago by
hans
• 0
3
votes
2
replies
4.5k
views
DESeq2 with high dispersions
deseq2
dispersion
low counts
9.7 years ago
meeta.mistry
▴ 30
23 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
Awards
• All
Popular Question
to
bd2000
▴ 30
Popular Question
to
shepherl
4.1k
Scholar
to
Michael Love
43k
Popular Question
to
Rob
• 0
Popular Question
to
Gordon Smyth
52k
Locations
• All
United States,
just now
United States,
4 minutes ago
Sweden,
5 minutes ago
United States,
8 minutes ago
United States,
16 minutes ago
Traffic: 750 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6