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Showing :
dispersion
•
reset
2
votes
2
replies
2.3k
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2
medianofratiostransformation
StatisticalMethod
Normalization
dispersion
13 months ago
Linton
• 0
0
votes
3
replies
1.1k
views
Dispersion outliers genes
Dispersion
DESeq2
20 months ago
raya.fai
▴ 60
1
vote
1
reply
1.1k
views
Dispersion estimates with DESeq2
dispersionestimates
dispersion
DESeq2
estimates
deseq2
updated 2.5 years ago by
Michael Love
43k • written 2.5 years ago by
Julia
▴ 10
1
vote
2
replies
1.6k
views
Design formula in DESeq2
groups
dispersion
DESeq2
desing
3.2 years ago
m.glymenaki
• 0
4
votes
5
replies
1.5k
views
No counts, just fold change data
EdgeR
Estimation
Dispersion
3.6 years ago
Manal
• 0
0
votes
0
replies
687
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 3.8 years ago by
Michael Love
43k • written 3.8 years ago by
catalina.gonzalez-gomez
• 0
3
votes
6
replies
3.6k
views
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
Dispersion
RNA-seq
DESeq2
Multiple-group
updated 4.0 years ago by
Michael Love
43k • written 4.3 years ago by
Kelen
▴ 10
0
votes
2
replies
1.0k
views
Normalization and dispersion estimates in timeseries data with highly variable read numbers
EdgeR
dispersion
normalization
updated 4.9 years ago by
Gordon Smyth
52k • written 5.0 years ago by
Ruben.wauters
• 0
3
votes
3
replies
2.1k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 5.6 years ago by
onlychainsaw2019
• 0 • written 6.0 years ago by
ilovesuperheroes1993
• 0
0
votes
6
replies
2.0k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
5.8 years ago • updated 5.7 years ago
fiona.dick91
▴ 60
0
votes
5
replies
2.9k
views
Dispersion calculation by DESeq2
DESeq2
dispersion
6.0 years ago
eva-m.petit
• 0
0
votes
4
replies
1.7k
views
DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2
dispersion
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
emilio.marmol
• 0
3
votes
3
replies
1.6k
views
DESseq2: Why can the dispersion be generelized over the conditions?
deseq2
dispersion
estimatedispersions
updated 6.6 years ago by
Ryan C. Thompson
★ 7.9k • written 6.6 years ago by
Mr.RB
▴ 20
8
votes
12
replies
11k
views
EdgeR: Explaning dispersion types to newbies
edger
dispersion
estimatedispersions
visualization
teaching
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
Mr.RB
▴ 20
0
votes
13
replies
6.8k
views
DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2
dispersion
6.8 years ago
Frederik Ziebell
▴ 30
0
votes
11
replies
2.5k
views
Strange dispersion plot
deseq2
dispersion
6.9 years ago
Moose123
• 0
5
votes
7
replies
7.7k
views
DESeq2 dispersion and p-value histograms
deseq2
rnaseq
fdrtool
dispersion
updated 7.3 years ago by
Bernd Klaus
▴ 610 • written 7.3 years ago by
rrcutler
▴ 70
1
vote
2
replies
1.2k
views
2-Factor Experiment in edgeR, Effect of no reps in one set and two reps in others
rnaseq
edger
differential expression
dispersion
updated 8.3 years ago by
Ryan C. Thompson
★ 7.9k • written 8.3 years ago by
nancyjwahl7
• 0
4
votes
3
replies
1.9k
views
How to get dispersion values for DESeq2
deseq2
dispersion
R
updated 8.6 years ago by
Michael Love
43k • written 8.6 years ago by
hiraksarkar.cs
▴ 10
1
vote
2
replies
1.6k
views
Common dispersion from estimateGLMRobustDisp()
edgeR
dispersion
updated 8.6 years ago by
Aaron Lun
★ 28k • written 8.6 years ago by
Jane Merlevede
▴ 90
1
vote
3
replies
2.3k
views
Error Estimating the NB Dispersion of a Dataset
dispersion
edgeR
updated 8.6 years ago by
Gordon Smyth
52k • written 8.6 years ago by
humberto_munoz
• 0
0
votes
1
reply
1.4k
views
How do I turn off dispersion in DESeq2?
deseq2
dispersion
updated 9.0 years ago by
Michael Love
43k • written 9.0 years ago by
hans
• 0
3
votes
2
replies
4.3k
views
DESeq2 with high dispersions
deseq2
dispersion
low counts
9.5 years ago
meeta.mistry
▴ 30
23 results • Page
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Recent ...
Replies
Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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