Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
dispersion
•
reset
2
votes
2
replies
969
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2
medianofratiostransformation
StatisticalMethod
Normalization
dispersion
6 months ago
Linton
• 0
0
votes
3
replies
816
views
Dispersion outliers genes
Dispersion
DESeq2
13 months ago
raya.fai
▴ 60
1
vote
1
reply
950
views
Dispersion estimates with DESeq2
dispersionestimates
dispersion
DESeq2
estimates
deseq2
updated 23 months ago by
Michael Love
42k • written 23 months ago by
Julia
▴ 10
1
vote
2
replies
1.3k
views
Design formula in DESeq2
groups
dispersion
DESeq2
desing
2.6 years ago
m.glymenaki
• 0
4
votes
5
replies
1.3k
views
No counts, just fold change data
EdgeR
Estimation
Dispersion
3.1 years ago
Manal
• 0
0
votes
0
replies
579
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 3.2 years ago by
Michael Love
42k • written 3.2 years ago by
catalina.gonzalez-gomez
• 0
3
votes
6
replies
3.1k
views
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
Dispersion
RNA-seq
DESeq2
Multiple-group
updated 3.4 years ago by
Michael Love
42k • written 3.7 years ago by
Kelen
▴ 10
0
votes
2
replies
853
views
Normalization and dispersion estimates in timeseries data with highly variable read numbers
EdgeR
dispersion
normalization
updated 4.4 years ago by
Gordon Smyth
51k • written 4.4 years ago by
Ruben.wauters
• 0
3
votes
3
replies
1.9k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 5.0 years ago by
onlychainsaw2019
• 0 • written 5.5 years ago by
ilovesuperheroes1993
• 0
0
votes
6
replies
1.7k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
5.2 years ago
fiona.dick91
▴ 60
0
votes
5
replies
2.6k
views
Dispersion calculation by DESeq2
DESeq2
dispersion
5.4 years ago
eva-m.petit
• 0
0
votes
4
replies
1.5k
views
DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2
dispersion
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
emilio.marmol
• 0
3
votes
3
replies
1.3k
views
DESseq2: Why can the dispersion be generelized over the conditions?
deseq2
dispersion
estimatedispersions
updated 6.0 years ago by
Ryan C. Thompson
★ 7.9k • written 6.0 years ago by
Mr.RB
▴ 20
8
votes
12
replies
9.2k
views
EdgeR: Explaning dispersion types to newbies
edger
dispersion
estimatedispersions
visualization
teaching
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
Mr.RB
▴ 20
0
votes
13
replies
5.8k
views
DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2
dispersion
6.2 years ago
Frederik Ziebell
▴ 30
0
votes
11
replies
2.3k
views
Strange dispersion plot
deseq2
dispersion
6.4 years ago
Moose123
• 0
5
votes
7
replies
7.0k
views
DESeq2 dispersion and p-value histograms
deseq2
rnaseq
fdrtool
dispersion
updated 6.7 years ago by
Bernd Klaus
▴ 610 • written 6.7 years ago by
rrcutler
▴ 70
1
vote
2
replies
1.1k
views
2-Factor Experiment in edgeR, Effect of no reps in one set and two reps in others
rnaseq
edger
differential expression
dispersion
updated 7.7 years ago by
Ryan C. Thompson
★ 7.9k • written 7.7 years ago by
nancyjwahl7
• 0
4
votes
3
replies
1.6k
views
How to get dispersion values for DESeq2
deseq2
dispersion
R
updated 8.0 years ago by
Michael Love
42k • written 8.0 years ago by
hiraksarkar.cs
▴ 10
1
vote
2
replies
1.4k
views
Common dispersion from estimateGLMRobustDisp()
edgeR
dispersion
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
Jane Merlevede
▴ 90
1
vote
3
replies
2.2k
views
Error Estimating the NB Dispersion of a Dataset
dispersion
edgeR
updated 8.1 years ago by
Gordon Smyth
51k • written 8.1 years ago by
humberto_munoz
• 0
0
votes
1
reply
1.3k
views
How do I turn off dispersion in DESeq2?
deseq2
dispersion
updated 8.4 years ago by
Michael Love
42k • written 8.4 years ago by
hans
• 0
3
votes
2
replies
4.1k
views
DESeq2 with high dispersions
deseq2
dispersion
low counts
8.9 years ago
meeta.mistry
▴ 30
23 results • Page
1 of 1
Recent ...
Replies
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Answer: unreal negative log2fc values
by
ATpoint
★ 4.2k
I don't see why this is unrealistic. A logFC of -10 is about -1000 on normal scale. The rough difference between the mean of these counts p…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
Awards
• All
Popular Question
to
jonellevillar
• 0
Popular Question
to
twtoal
▴ 10
Popular Question
to
mikat
• 0
Popular Question
to
mohammedtoufiq91
▴ 10
Popular Question
to
ATpoint
★ 4.2k
Locations
• All
WEHI, Melbourne, Australia,
1 minute ago
United States,
17 minutes ago
United States,
18 minutes ago
European Union,
1 hour ago
United States,
1 hour ago
Traffic: 934 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6