Bioconductor Deconvolution

Showing : deconvolution • reset

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323

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deconvolution rnaseqGene RNAseq

5 months ago JG13 • 0

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1.5k

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deconvolution r scRNAseq bioinformatics

2.8 years ago Hasan Alanya • 0

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1.1k

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Deconvolution

3.0 years ago Barista • 0

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801

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PSEA Deconvolution

4.5 years ago kavator ▴ 30

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1.1k

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methylCC deconvolution methylation dmrseq serum

4.6 years ago marcin.bazyliszek • 0

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900

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limma microarray deconvolution cell type

updated 4.8 years ago by Gordon Smyth 52k • written 4.8 years ago by antgomo • 0

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1.5k

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deseq2 deconvolution normalization limma

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by bruce.moran ▴ 30

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1.1k

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deconvolution methods

6.8 years ago casey.rimland ▴ 170

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1.2k

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deconvolution rnaseq psea

6.8 years ago WouterDeCoster ▴ 130

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2.9k

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deconvolution rna-seq

updated 9.2 years ago by Steve Lianoglou ★ 13k • written 9.2 years ago by Pauly Lin ▴ 160

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1.7k

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deconvolution cellmix

9.5 years ago carleshf ▴ 10

11 results • Page 1 of 1

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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

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Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to Ou, Jianhong ★ 1.3k