Showing : deconvolution • reset
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Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
7 months ago JG13 • 0
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2
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1.6k
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How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
3.0 years ago Hasan Alanya • 0
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1.2k
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Best deconvolution method
Deconvolution
3.2 years ago Barista • 0
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1
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830
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PSEA deconvolution; some of the coefficient is NA?
PSEA Deconvolution
4.7 years ago kavator ▴ 30
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Deconvolution methods from WGBS data (methylation)
methylCC deconvolution methylation dmrseq serum
4.8 years ago marcin.bazyliszek • 0
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csSAMfit with covariates
limma microarray deconvolution cell type
updated 5.0 years ago by 52k • written 5.0 years ago by • 0
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4
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1.5k
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varianceStabilizingTransformation for clustering, deconvolution
deseq2 deconvolution normalization limma
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 30
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution methods
7.0 years ago casey.rimland ▴ 170
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Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution rnaseq psea
7.0 years ago WouterDeCoster ▴ 130
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3.0k
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Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution rna-seq
updated 9.4 years ago by ★ 13k • written 9.4 years ago by ▴ 160
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CellMix - Custom matrix with Abbas signature
deconvolution cellmix
9.7 years ago carleshf ▴ 10
11 results • Page 1 of 1
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Comment: DESeq2 adujsted p-value cutoff seemingly not working by Guilherme • 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp by Ian D. ▴ 70
Please can you comment on this @rory.
Comment: Why the order of sample names in the beta matrix affect the analysis results of by 81becky • 0
It sounds like you're experiencing a common issue with data alignment in Champ.DMP. Ensure that your beta matrix and PD files are consisten…
Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by Blair • 0
@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…
Comment: error in ChAMP loading file by 81becky • 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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