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Showing :
decipher
•
reset
0
votes
2
replies
210
views
DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
6 weeks ago
makala
• 0
0
votes
0
replies
207
views
LearnTaxa with custom Silva
DECIPHER
LearnTaxa
11 weeks ago
Eryn
• 0
0
votes
2
replies
946
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 4.1 years ago by
joannew
• 0
0
votes
3
replies
831
views
DECIPHER IdTaxa: Speed up training?
DECIPHER
idtaxa
updated 12 months ago by
Erik Wright
▴ 150 • written 12 months ago by
Till
▴ 30
3
votes
5
replies
1.8k
views
Error: 'IdClusters'
DECIPHER
updated 13 months ago by
Ling-Hsiu
▴ 10 • written 16 months ago by
julieta.micorriza
• 0
0
votes
0
replies
401
views
Updating 16S training set with LearnTaxa
DECIPHER
18 months ago
Connor
• 0
0
votes
3
replies
1.1k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 19 months ago by
Erik Wright
▴ 150 • written 19 months ago by
Nelli
• 0
0
votes
1
reply
744
views
OligoArrayAux fails to compile
DECIPHER
19 months ago
fabian.roger08
▴ 10
0
votes
3
replies
1.3k
views
Issue::DesignPrimers DECIPHER
DECIPHER
DesignPrimers
updated 2.8 years ago by
slwmartin
• 0 • written 2.8 years ago by
Mailys
• 0
0
votes
1
reply
807
views
ORF finding in DECIPHER
ORF
DECIPHER
ORFhunteR
updated 3.1 years ago by
Erik Wright
▴ 150 • written 3.1 years ago by
tkirkland
• 0
0
votes
5
replies
2.3k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 3.1 years ago by
fabian.roger08
▴ 10 • written 4.4 years ago by
fabian.roger
• 0
0
votes
5
replies
1.6k
views
DECIPHER maximum allowable size
DECIPHER
Alignment
alig
updated 3.1 years ago by
Erik Wright
▴ 150 • written 3.1 years ago by
curiousmind007
▴ 10
0
votes
0
replies
997
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.2 years ago
anrongloh
• 0
0
votes
1
reply
882
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups
RStudio
DECIPHER
Specificprimers
updated 3.4 years ago by
Erik Wright
▴ 150 • written 3.4 years ago by
noeliaruizalonso23
• 0
0
votes
5
replies
1.8k
views
Program not properly installed/program not accessible by system
R
decipher
updated 3.3 years ago by
Erik Wright
▴ 150 • written 4.2 years ago by
hoonhuiyi
• 0
0
votes
0
replies
819
views
DECIPHER Probe Design Questions
DECIPHER
3.6 years ago
henry1995910343
• 0
0
votes
2
replies
838
views
insufficient alignment
DECIPHER
Alignment
3.7 years ago • updated 3.6 years ago
julius_vn
• 0
0
votes
3
replies
1.8k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 3.8 years ago by
UBod
▴ 290 • written 3.8 years ago by
matamunee
• 0
1
vote
6
replies
1.9k
views
Issue with DECIPHER::IdTaxa
DECIPHER
IdTaxa
3.8 years ago
sebastian.mynott
• 0
0
votes
2
replies
991
views
how to design probes using decipher
R
decipher
4.2 years ago
hoonhuiyi
• 0
0
votes
5
replies
4.0k
views
Error in (function (classes, fdef, mtable)
software error
DECIPHER
updated 4.2 years ago by
shepherl
3.9k • written 4.2 years ago by
hoonhuiyi
• 0
0
votes
21
replies
3.0k
views
How to use DECIPHER to design group-specific primers
Decipher
4.2 years ago
hoonhuiyi
• 0
0
votes
1
reply
959
views
DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 4.5 years ago by
Erik Wright
▴ 150 • written 4.5 years ago by
brendan.furneaux
▴ 10
0
votes
1
reply
762
views
PCR simulation with PNAs
PCR
DECIPHER
PNA
4.8 years ago
marissaruthlee
• 0
1
vote
2
replies
1.5k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 4.8 years ago by
Erik Wright
▴ 150 • written 4.8 years ago by
lauren.fitch
• 0
0
votes
0
replies
679
views
Alignment larger than the maximum allowable size
DECIPHER
updated 5.0 years ago by
shepherl
3.9k • written 5.0 years ago by
cmasembe
• 0
2
votes
4
replies
1.8k
views
How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher
r
protein alignment
6.2 years ago
reubenmcgregor88
• 0
2
votes
2
replies
2.0k
views
How to combine sequences from different stringsets?
biostrings
decipher
updated 6.4 years ago by
Mike Smith
★ 6.5k • written 6.4 years ago by
reubenmcgregor88
• 0
1
vote
3
replies
1.3k
views
Transform index to chromosome in DECIPHER package
decipher
updated 6.5 years ago by
Erik Wright
▴ 150 • written 6.5 years ago by
Vinicius Henrique da Silva
▴ 40
5
votes
7
replies
1.7k
views
Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R
decipher
biostrings
updated 6.5 years ago by
Erik Wright
▴ 150 • written 6.5 years ago by
reubenmcgregor88
• 0
0
votes
2
replies
1.1k
views
Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r
biostrings
decipher
6.5 years ago
reubenmcgregor88
• 0
2
votes
5
replies
1.7k
views
Colour a phylogenetic tree, based on column in DECIPHER?
r
decipher
biostrings
updated 6.5 years ago by
Erik Wright
▴ 150 • written 6.5 years ago by
reubenmcgregor88
• 0
2
votes
3
replies
1.9k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher
DNA
biostrings
updated 6.5 years ago by
Erik Wright
▴ 150 • written 6.5 years ago by
reubenmcgregor88
• 0
0
votes
1
reply
1.3k
views
DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher
alignment
updated 6.7 years ago by
Erik Wright
▴ 10 • written 6.7 years ago by
emma.berdan
• 0
0
votes
1
reply
1.6k
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment
decipher
6.7 years ago
c.l.frankling
• 0
2
votes
5
replies
1.9k
views
Multiple Sequence Alignment using DNA sequence
msa
decipher
7.1 years ago
bbista91
▴ 10
1
vote
5
replies
1.6k
views
DECIPHER version bug using biocLite()
DECIPHER
8.1 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
983
views
Possible bug in ConsensusSequence
DECIPHER
updated 8.2 years ago by
Erik Wright
▴ 10 • written 8.2 years ago by
rob.lanfear
• 0
0
votes
3
replies
2.7k
views
mt.teststat
multtest
DECIPHER
multtest
DECIPHER
updated 8.5 years ago by
Smeeta Shrestha
▴ 20 • written 21.2 years ago by
Park, Richard
▴ 220
0
votes
0
replies
1.6k
views
Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics
DECIPHER
Genetics
DECIPHER
10.3 years ago
Kathi Zarnack
▴ 110
0
votes
1
reply
1.2k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation
zebrafish
probe
DECIPHER
Annotation
zebrafish
probe
DECIPHER
updated 13.9 years ago by
Marc Carlson
★ 7.2k • written 13.9 years ago by
Samantha England
▴ 40
0
votes
1
reply
1.8k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo
DECIPHER
oligo
DECIPHER
updated 14.1 years ago by
Benilton Carvalho
★ 4.3k • written 14.1 years ago by
jos matejus
▴ 40
0
votes
0
replies
1.2k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray
affy
gcrma
oligo
arrayQualityMetrics
DECIPHER
Microarray
affy
gcrma
oligo
14.1 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
1.5k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics
Clustering
DECIPHER
Genetics
Clustering
DECIPHER
14.3 years ago
Radek Blatny
▴ 60
0
votes
0
replies
1.7k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
15.0 years ago
Joern Toedling
▴ 450
0
votes
4
replies
1.4k
views
help with large Rgraphviz output
graph
DECIPHER
graph
DECIPHER
updated 18.1 years ago by
Seth Falcon
★ 7.4k • written 18.1 years ago by
Kimpel, Mark W
▴ 890
46 results • Page
1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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