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decipher
•
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0
votes
0
replies
56
views
Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phyloseq
DECIPHER
taxonomyassignment
phyloseq
dada2
Pr2V5
13 days ago
Maggie
• 0
1
vote
3
replies
885
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER
GenomeInfoDbData
Bioconductor
GenomeInfoDb
written 5 months ago by
dbjohnson7
• 0
0
votes
2
replies
436
views
DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
8 months ago
makala
• 0
0
votes
0
replies
518
views
LearnTaxa with custom Silva
DECIPHER
LearnTaxa
9 months ago
Eryn
• 0
0
votes
2
replies
1.2k
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 4.6 years ago by
joannew
• 0
0
votes
3
replies
1.1k
views
DECIPHER IdTaxa: Speed up training?
DECIPHER
idtaxa
updated 18 months ago by
Erik Wright
▴ 150 • written 19 months ago by
Till
▴ 30
3
votes
5
replies
2.3k
views
Error: 'IdClusters'
DECIPHER
updated 20 months ago by
Ling-Hsiu
▴ 10 • written 23 months ago by
julieta.micorriza
• 0
0
votes
0
replies
535
views
Updating 16S training set with LearnTaxa
DECIPHER
2.1 years ago
Connor
• 0
0
votes
3
replies
1.4k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 2.1 years ago by
Erik Wright
▴ 150 • written 2.1 years ago by
Nelli
• 0
0
votes
1
reply
967
views
OligoArrayAux fails to compile
DECIPHER
2.2 years ago
fabian.roger08
▴ 10
0
votes
3
replies
1.6k
views
Issue::DesignPrimers DECIPHER
DECIPHER
DesignPrimers
updated 3.3 years ago by
slwmartin
• 0 • written 3.4 years ago by
Mailys
• 0
0
votes
1
reply
966
views
ORF finding in DECIPHER
ORF
DECIPHER
ORFhunteR
updated 3.6 years ago by
Erik Wright
▴ 150 • written 3.6 years ago by
tkirkland
• 0
0
votes
5
replies
2.6k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 3.6 years ago by
fabian.roger08
▴ 10 • written 4.9 years ago by
fabian.roger
• 0
0
votes
5
replies
1.9k
views
DECIPHER maximum allowable size
DECIPHER
Alignment
alig
updated 3.7 years ago by
Erik Wright
▴ 150 • written 3.7 years ago by
curiousmind007
▴ 10
0
votes
0
replies
1.2k
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.8 years ago
anrongloh
• 0
0
votes
1
reply
1.1k
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups
RStudio
DECIPHER
Specificprimers
updated 3.9 years ago by
Erik Wright
▴ 150 • written 3.9 years ago by
noeliaruizalonso23
• 0
0
votes
5
replies
2.1k
views
Program not properly installed/program not accessible by system
R
decipher
updated 3.8 years ago by
Erik Wright
▴ 150 • written 4.8 years ago by
hoonhuiyi
• 0
0
votes
0
replies
995
views
DECIPHER Probe Design Questions
DECIPHER
4.2 years ago
henry1995910343
• 0
0
votes
2
replies
1.0k
views
insufficient alignment
DECIPHER
Alignment
4.2 years ago
julius_vn
• 0
0
votes
3
replies
2.1k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 4.4 years ago by
UBod
▴ 300 • written 4.4 years ago by
matamunee
• 0
1
vote
6
replies
2.3k
views
Issue with DECIPHER::IdTaxa
DECIPHER
IdTaxa
4.4 years ago
sebastian.mynott
• 0
0
votes
2
replies
1.2k
views
how to design probes using decipher
R
decipher
4.7 years ago
hoonhuiyi
• 0
0
votes
5
replies
4.4k
views
Error in (function (classes, fdef, mtable)
software error
DECIPHER
updated 4.8 years ago by
shepherl
4.1k • written 4.8 years ago by
hoonhuiyi
• 0
0
votes
21
replies
3.5k
views
How to use DECIPHER to design group-specific primers
Decipher
4.8 years ago
hoonhuiyi
• 0
0
votes
1
reply
1.2k
views
DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 5.0 years ago by
Erik Wright
▴ 150 • written 5.0 years ago by
brendan.furneaux
▴ 10
0
votes
1
reply
921
views
PCR simulation with PNAs
PCR
DECIPHER
PNA
5.3 years ago
marissaruthlee
• 0
1
vote
2
replies
1.7k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 5.4 years ago by
Erik Wright
▴ 150 • written 5.4 years ago by
lauren.fitch
• 0
0
votes
0
replies
881
views
Alignment larger than the maximum allowable size
DECIPHER
updated 5.5 years ago by
shepherl
4.1k • written 5.5 years ago by
cmasembe
• 0
2
votes
4
replies
2.1k
views
How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher
r
protein alignment
6.7 years ago
reubenmcgregor88
• 0
2
votes
2
replies
2.4k
views
How to combine sequences from different stringsets?
biostrings
decipher
updated 7.0 years ago by
Mike Smith
★ 6.6k • written 7.0 years ago by
reubenmcgregor88
• 0
1
vote
3
replies
1.5k
views
Transform index to chromosome in DECIPHER package
decipher
updated 7.0 years ago by
Erik Wright
▴ 150 • written 7.0 years ago by
Vinicius Henrique da Silva
▴ 40
5
votes
7
replies
2.0k
views
Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R
decipher
biostrings
updated 7.0 years ago by
Erik Wright
▴ 150 • written 7.0 years ago by
reubenmcgregor88
• 0
0
votes
2
replies
1.2k
views
Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r
biostrings
decipher
7.1 years ago
reubenmcgregor88
• 0
2
votes
5
replies
2.0k
views
Colour a phylogenetic tree, based on column in DECIPHER?
r
decipher
biostrings
updated 7.1 years ago by
Erik Wright
▴ 150 • written 7.1 years ago by
reubenmcgregor88
• 0
2
votes
3
replies
2.1k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher
DNA
biostrings
updated 7.1 years ago by
Erik Wright
▴ 150 • written 7.1 years ago by
reubenmcgregor88
• 0
0
votes
1
reply
1.4k
views
DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher
alignment
updated 7.3 years ago by
Erik Wright
▴ 10 • written 7.3 years ago by
emma.berdan
• 0
0
votes
1
reply
1.8k
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment
decipher
7.3 years ago
c.l.frankling
• 0
2
votes
5
replies
2.2k
views
Multiple Sequence Alignment using DNA sequence
msa
decipher
7.7 years ago
bbista91
▴ 10
1
vote
5
replies
1.8k
views
DECIPHER version bug using biocLite()
DECIPHER
8.6 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.1k
views
Possible bug in ConsensusSequence
DECIPHER
updated 8.7 years ago by
Erik Wright
▴ 10 • written 8.7 years ago by
rob.lanfear
• 0
0
votes
3
replies
2.9k
views
mt.teststat
multtest
DECIPHER
multtest
DECIPHER
updated 9.0 years ago by
Smeeta Shrestha
▴ 20 • written 21.8 years ago by
Park, Richard
▴ 220
0
votes
0
replies
1.7k
views
Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics
DECIPHER
Genetics
DECIPHER
10.9 years ago
Kathi Zarnack
▴ 110
0
votes
1
reply
1.3k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation
zebrafish
probe
DECIPHER
Annotation
zebrafish
probe
DECIPHER
updated 14.5 years ago by
Marc Carlson
★ 7.2k • written 14.5 years ago by
Samantha England
▴ 40
0
votes
1
reply
2.0k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo
DECIPHER
oligo
DECIPHER
updated 14.6 years ago by
Benilton Carvalho
★ 4.3k • written 14.6 years ago by
jos matejus
▴ 40
0
votes
0
replies
1.3k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray
affy
gcrma
oligo
arrayQualityMetrics
DECIPHER
Microarray
affy
gcrma
oligo
14.6 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
1.7k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics
Clustering
DECIPHER
Genetics
Clustering
DECIPHER
14.8 years ago
Radek Blatny
▴ 60
0
votes
0
replies
1.8k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
15.6 years ago
Joern Toedling
▴ 450
0
votes
4
replies
1.5k
views
help with large Rgraphviz output
graph
DECIPHER
graph
DECIPHER
updated 18.6 years ago by
Seth Falcon
★ 7.4k • written 18.6 years ago by
Kimpel, Mark W
▴ 890
48 results • Page
1 of 1
Recent ...
Replies
Comment: How to sort negative log2FC or FC in RNAseq for GSEA?
by
Quang NN
▴ 10
Thank you so much for taking time to provide this clarification!
Comment: How can I generate a heatmap and clustering of differentially expressed genes in
by
Renuka
• 0
Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
georgeyu703
• 0
Michael, Thank you very much!
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
Michael Love
43k
Yes, with the knowledge that, it is expected to be underpowered.
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
georgeyu703
• 0
Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?
Votes
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Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
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