Bioconductor Data

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757

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HELP Data

updated 2.3 years ago by Guido Hooiveld ★ 4.1k • written 2.3 years ago by mcclurejenniferc • 0

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664

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BAM Segmentation CINdex VCF Data

2.3 years ago raven1306 • 0

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2.7k

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ExpressionSet Assay NanoString Error Data

updated 2.4 years ago by James W. MacDonald 67k • written 2.4 years ago by junli1988 • 0

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718

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Cytometry R Data

2.5 years ago hamiltond ▴ 10

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1.1k

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data immunology software vaccinology

3.3 years ago Daniel • 0

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1.4k

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TCGAbiolinks data normalize l

updated 3.4 years ago by Kevin Blighe ★ 4.0k • written 3.4 years ago by DANIELA • 0

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2.2k

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data package submission BiocCheck

5.4 years ago j.flesch ▴ 10

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1.1k

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package data

6.3 years ago divyswar01 • 0

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817

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cellGrowth data

6.7 years ago muitalegal888 • 0

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1.4k

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omiccircos bug hg19 hg18 data

7.6 years ago matthew.bashton • 0

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1.3k

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transform flow cytometry data

updated 7.9 years ago by SamGG ▴ 360 • written 7.9 years ago by cr • 0

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1.4k

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rna-seq data

updated 8.0 years ago by Gordon Smyth 52k • written 8.0 years ago by bioinformatics ▴ 20

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1.7k

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edger data analysis

9.5 years ago Pau Marc Muñoz Torres ▴ 20

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1.4k

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data

9.6 years ago Bogdan ▴ 670

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3.5k

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biseq fdr data results

9.7 years ago • updated 9.6 years ago mnaymik ▴ 10

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2.2k

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flowCore flowjo data

updated 10.1 years ago by Greg Finak ▴ 150 • written 10.1 years ago by AJC ▴ 10

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3.3k

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limma export log2 data agilent

updated 10.2 years ago by James W. MacDonald 67k • written 10.2 years ago by Jahn Davik ▴ 110

17 results • Page 1 of 1

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Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10

Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…

Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k

I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Also, re DMR.plot(), yes the understanding is that all DMRs from EPICv2 should be plotted in hg38. I've left that implied for the user sinc…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Thanks for this. If your data is from 450K, you'll have to call your DMRs in hg19, and then lift the DMR ranges over to hg38 p…

Votes

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

Answer: Deseq2 Design

Answer: Fold change calculation in Diffbind vs. DESEQ2?

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k