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dada2
•
reset
0
votes
4
replies
766
views
Trouble Installing DADA2 (warning: R new user)
dada2
updated 5 months ago by
shepherl
4.1k • written 5 months ago by
schott01
• 0
0
votes
2
replies
707
views
Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
5 months ago • updated 3 months ago
abhisek001
• 0
0
votes
1
reply
391
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor
dada2
6 months ago • updated 5 months ago
abhisek001
• 0
0
votes
0
replies
523
views
is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
13 months ago
Sara
• 0
0
votes
0
replies
598
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
13 months ago
Sara
• 0
2
votes
2
replies
664
views
Broken UNITE 9.0 link (General FASTA Release)
dada2
UNITE
15 months ago
GlycineMax
• 0
0
votes
14
replies
2.6k
views
Trouble downloading dada2
dada
dada2
21 months ago
elliottchon97
• 0
0
votes
3
replies
1.3k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 24 months ago by
Erik Wright
▴ 150 • written 24 months ago by
Nelli
• 0
0
votes
2
replies
1.1k
views
Microbiome 16S amplicon analysis in dada2
bioinformatics
DADA2
2.3 years ago
anasjamshed1994
• 0
1
vote
3
replies
1.4k
views
Assign taxonomy is not working
Assigntaxonomy
dada2
updated 2.7 years ago by
shepherl
4.1k • written 2.7 years ago by
safiq713
• 0
27
votes
13
replies
18k
views
problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignments’ , ‘ShortRead’ on macOS Big Sur using R 4.1.0
dada2
updated 22 months ago by
Yoon Young
• 0 • written 3.5 years ago by
lh290
▴ 60
0
votes
4
replies
2.1k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData
phyloseq
dada2
2.9 years ago
ymtan
• 0
0
votes
0
replies
962
views
Construct a phyloseq object directly from the dada2 outputs
phyloseq
dada2
3.3 years ago
Manijeh
• 0
0
votes
0
replies
1.2k
views
dada2 (derepFastaq function) 'Calloc' could not allocate memory (1000000 of 16 bytes) in r version 4.1.0
dada2
3.3 years ago
Yoan
• 0
0
votes
5
replies
2.6k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 3.5 years ago by
fabian.roger08
▴ 10 • written 4.8 years ago by
fabian.roger
• 0
0
votes
1
reply
914
views
FDR Correction
dada2
Metagenomics
DESeq2
updated 3.5 years ago by
Michael Love
43k • written 3.5 years ago by
GlycineMax
• 0
4
votes
8
replies
4.6k
views
Is there a different way to generate a tree for phyloseq object
r
dada2
Bioconductor
updated 3.6 years ago by
Axel Klenk
★ 1.0k • written 3.6 years ago by
mschmidt
▴ 10
0
votes
0
replies
1.2k
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.7 years ago
anrongloh
• 0
1
vote
1
reply
4.3k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 3.7 years ago by
James W. MacDonald
67k • written 3.7 years ago by
Daniel
• 0
0
votes
0
replies
1.3k
views
from raw reads ASV table - dada2 - small number of merged pairs
dada2
515F - 806Rd
4.7 years ago
beginner87
• 0
0
votes
1
reply
2.1k
views
Error: record does not start with '@'
DADA2
.fq
updated 5.9 years ago by
James W. MacDonald
67k • written 5.9 years ago by
mafusa20
• 0
0
votes
1
reply
1.2k
views
Cannot Update Biostrings to Latest Version
dada2
biostrings
updated 6.3 years ago by
James W. MacDonald
67k • written 6.3 years ago by
gradypierroz
• 0
4
votes
4
replies
2.8k
views
Using DADA2 output for DESeq2
deseq2
dada2
updated 6.8 years ago by
benjamin.j.callahan
▴ 50 • written 6.8 years ago by
blastzone.heimerdinger
▴ 20
0
votes
1
reply
1.9k
views
dada2 unavailable for R 3.4.1
bioconductor
R
dada2
updated 7.3 years ago by
daniel.vantwisk
▴ 50 • written 7.3 years ago by
rggriggs
• 0
1
vote
7
replies
19k
views
Dada2 and GenomeInfoDbData installation
dada2
GenomeInfoDbData
updated 7.4 years ago by
jiangjing_ing
• 0 • written 7.5 years ago by
navlern
• 0
25 results • Page
1 of 1
Recent ...
Replies
Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable
by
dtzhu337
• 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable
by
Gordon Smyth
52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd
by
joseph.joonsang
• 0
> dim(spe) [1] 19962 425
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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Ou, Jianhong
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mikat
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